BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0452500 Os08g0452500|AK106714
         (133 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20820.1  | chr5:7046911-7047294 REVERSE LENGTH=128             83   4e-17
AT1G17345.1  | chr1:5940525-5940920 FORWARD LENGTH=132             74   2e-14
AT1G72430.1  | chr1:27265150-27265509 REVERSE LENGTH=120           72   6e-14
AT3G12955.1  | chr3:4135659-4136078 REVERSE LENGTH=140             51   1e-07

>AT5G20820.1 | chr5:7046911-7047294 REVERSE LENGTH=128
          Length = 127

 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 51/80 (63%), Gaps = 3/80 (3%)

Query: 57  LHPVYVGKSRRRYLIAEELVGHPLFQNLVDRXXXXXXXXXXXXXXCEVVLFEHLLWMLEN 116
           L  VYVG++RR Y ++ ++V HPLFQ L                 CEVVLFEHLLWMLEN
Sbjct: 48  LQTVYVGRTRRTYHVSSDVVSHPLFQQLAAVDGGCGSEDGSISVSCEVVLFEHLLWMLEN 107

Query: 117 AD---PQPESLDELVEYYAC 133
           AD    +PES+ ELVE+YAC
Sbjct: 108 ADADESRPESVYELVEFYAC 127



>AT1G17345.1 | chr1:5940525-5940920 FORWARD LENGTH=132
          Length = 131

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 65/145 (44%), Gaps = 28/145 (19%)

Query: 1   MGKGGGLSKLRCMIRRWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXFHGADEVPK--GLH 58
           M   G L+KL+  I++W                                  EV K   LH
Sbjct: 1   MAIFGKLTKLKSAIKKWPSLTKNHHSTMCTAST---------------AVSEVSKCEDLH 45

Query: 59  PVYVGKSRRRYLIAEELVGHPLFQNLVDRXXXXXXX---XXXXXXXCEVVLFEHLLWMLE 115
            VYVGKSRR Y+++  ++ HPLFQ L+DR                 CEVVLFEHLLWML+
Sbjct: 46  VVYVGKSRRPYMLSSHVIAHPLFQELLDRSSRFIEERHDQETVLVACEVVLFEHLLWMLK 105

Query: 116 NA--------DPQPESLDELVEYYA 132
           N+        D +  S++EL E+Y 
Sbjct: 106 NSSSDHGDEDDRERGSVEELAEFYT 130



>AT1G72430.1 | chr1:27265150-27265509 REVERSE LENGTH=120
          Length = 119

 Score = 72.4 bits (176), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 20/135 (14%)

Query: 1   MGKGGGLSKLRCMIRRWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXFHGADEVPK--GLH 58
           M K G L+KL+  +++W                                +DE+ +   LH
Sbjct: 1   MAKVGKLTKLKSAMKKWPSFAKNHHHSTSSAAV----------------SDELSEDNNLH 44

Query: 59  PVYVGKSRRRYLIAEELVGHPLFQNLVDRXXXXXXXX-XXXXXXCEVVLFEHLLWMLENA 117
            VYVG++RR Y++  +++ HPLFQ LVDR               CEVVLFEHLLWML++ 
Sbjct: 45  VVYVGQTRRPYMLRPDIISHPLFQELVDRSSSRSIEQDREIVVACEVVLFEHLLWMLKSG 104

Query: 118 DPQPESLDELVEYYA 132
             +  S++EL E+Y 
Sbjct: 105 Q-EGGSVEELAEFYT 118



>AT3G12955.1 | chr3:4135659-4136078 REVERSE LENGTH=140
          Length = 139

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 7/86 (8%)

Query: 53  VPKGLHPVYVGKSRRRYLIAEELVGHPLFQNLVDRXXXXXXXXXX-----XXXXCEVVLF 107
            P     V VG++++ YLI+++ + HPL   LV++                   CEVVLF
Sbjct: 51  TPSMYQTVLVGRTKKPYLISKKHLKHPLLNALVEKQQRYEEDDNEDGSCIITVKCEVVLF 110

Query: 108 EHLLWMLENADPQP--ESLDELVEYY 131
           +HLLWMLE  D     ESLD+    Y
Sbjct: 111 DHLLWMLEYGDEVHILESLDDFAHLY 136



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.144    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,206,689
Number of extensions: 54058
Number of successful extensions: 219
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 4
Length of query: 133
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 45
Effective length of database: 8,693,961
Effective search space: 391228245
Effective search space used: 391228245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 106 (45.4 bits)