BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0446800 Os08g0446800|J100040N04
         (180 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57685.1  | chr5:23366356-23366802 REVERSE LENGTH=149           58   2e-09
AT4G25760.1  | chr4:13116149-13116538 FORWARD LENGTH=130           55   2e-08

>AT5G57685.1 | chr5:23366356-23366802 REVERSE LENGTH=149
          Length = 148

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 34  WHSPVPYXXXXXXXXXXXXXXXXXXXXCSYWKLSGYLEXXXXXXXXXXXXXXXXXXXXXX 93
           WHSPVPY                    CSYW+LSGYL+                      
Sbjct: 28  WHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSGYLDGEENQSRERDLEVGDVKPDK-- 85

Query: 94  XSELPPPIWEEKILVIMAGDVKPTYLATP 122
            + + P    EK LVIMAG+VKPTYLATP
Sbjct: 86  -TAVKPVALPEKFLVIMAGNVKPTYLATP 113



>AT4G25760.1 | chr4:13116149-13116538 FORWARD LENGTH=130
          Length = 129

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 34  WHSPVPYXXXXXXXXXXXXXXXXXXXXCSYWKLSGYLEXXXXXXXXXXXXXXXXXXXXXX 93
           WHSPVPY                    CSYW+LSG  E                      
Sbjct: 28  WHSPVPYLFGGLAAMLALICVALLILACSYWRLSGSAERDLEAGDDAKPDNDTNKTKH-- 85

Query: 94  XSELPPPIWEEKILVIMAGDVKPTYLATP 122
            +E+P     EK LVIMAGDV+PTYLATP
Sbjct: 86  -TEMP-----EKFLVIMAGDVRPTYLATP 108



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.132    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,324,549
Number of extensions: 56996
Number of successful extensions: 128
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 2
Length of query: 180
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 88
Effective length of database: 8,584,297
Effective search space: 755418136
Effective search space used: 755418136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 108 (46.2 bits)