BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0440100 Os08g0440100|AK068551
         (179 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58070.1  | chr5:23500512-23501156 REVERSE LENGTH=187          264   2e-71

>AT5G58070.1 | chr5:23500512-23501156 REVERSE LENGTH=187
          Length = 186

 Score =  264 bits (674), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 122/180 (67%), Positives = 147/180 (81%), Gaps = 1/180 (0%)

Query: 1   MKVVRNLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLNETWTDGRRGH 60
           M+VV+ L++ERYMGRWYEIA FPSRFQP++G +TRATYTL  DG + VLNETW++G+RG 
Sbjct: 7   MEVVKGLNVERYMGRWYEIASFPSRFQPKNGVDTRATYTLNPDGTIHVLNETWSNGKRGF 66

Query: 61  IEGTAYRADPVSDEAKLKVKFYVPPFLPIFPVVGDYWVLHVDDAYSYALVGQPSLNYLWI 120
           IEG+AY+ADP SDEAKLKVKFYVPPFLPI PV GDYWVL++D  Y +AL+GQPS +YLWI
Sbjct: 67  IEGSAYKADPKSDEAKLKVKFYVPPFLPIIPVTGDYWVLYIDPDYQHALIGQPSRSYLWI 126

Query: 121 LCRQPHMDEEVYGQLVERAKEEGYDVSKLKKTAHPDPPPETEQSAGD-RGVWWIKSLFGR 179
           L R   M+EE Y QLVE+A EEGYD+SKL KT   D PPE+  +  D +GVWW KSLFG+
Sbjct: 127 LSRTAQMEEETYKQLVEKAVEEGYDISKLHKTPQSDTPPESNTAPEDSKGVWWFKSLFGK 186



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.139    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,700,387
Number of extensions: 206122
Number of successful extensions: 461
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 460
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 87
Effective length of database: 8,584,297
Effective search space: 746833839
Effective search space used: 746833839
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)