BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0434100 Os08g0434100|AB052842
(229 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G26820.1 | chr1:9292760-9293722 REVERSE LENGTH=223 278 2e-75
AT2G02990.1 | chr2:873714-874667 FORWARD LENGTH=231 270 6e-73
AT1G14220.1 | chr1:4858642-4859601 REVERSE LENGTH=229 268 2e-72
AT1G14210.1 | chr1:4856902-4857941 REVERSE LENGTH=248 201 4e-52
AT2G39780.1 | chr2:16591256-16593515 FORWARD LENGTH=260 120 7e-28
>AT1G26820.1 | chr1:9292760-9293722 REVERSE LENGTH=223
Length = 222
Score = 278 bits (710), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 118/205 (57%), Positives = 157/205 (76%), Gaps = 2/205 (0%)
Query: 25 QDYDFFFLVLQWPGSYCDTKQSCCYPRSGKPAADFGIHGLWPNRDDGSYPQNCDPDSEFD 84
QD+DFF+ VLQWPG+YCD++ SCCYP++GKPAADFGIHGLWPN G +PQNC+PDS FD
Sbjct: 20 QDFDFFYFVLQWPGAYCDSRHSCCYPQTGKPAADFGIHGLWPNYKTGGWPQNCNPDSRFD 79
Query: 85 PSKVSDLLGSMRSEWPTLACPSNDGIRFWAHEWEKHGTCAAAALGDEHGYFEAALRLRSR 144
+VSDL+ ++ EWPTL+CPSNDG++FW HEWEKHGTCA + L D+H YFEA L+L+ +
Sbjct: 80 DLRVSDLMSDLQREWPTLSCPSNDGMKFWTHEWEKHGTCAESEL-DQHDYFEAGLKLKQK 138
Query: 145 LPVLAALRDGGVSPDGGYYTLSQIKGAIQRGVGAEPFVECNRDESGNSQLYQLYFCVDAA 204
+L AL + G+ PD +Y + I+ I++ VG P +ECN+D S NSQLYQ+Y CVD +
Sbjct: 139 ANLLHALTNAGIKPDDKFYEMKDIENTIKQVVGFAPGIECNKDSSHNSQLYQIYLCVDTS 198
Query: 205 GERFVDCPASPGGRPCGNRIEFPAF 229
+F++CP P GR C +R++FP F
Sbjct: 199 ASKFINCPVMPHGR-CDSRVQFPKF 222
>AT2G02990.1 | chr2:873714-874667 FORWARD LENGTH=231
Length = 230
Score = 270 bits (689), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 120/205 (58%), Positives = 150/205 (73%), Gaps = 2/205 (0%)
Query: 25 QDYDFFFLVLQWPGSYCDTKQSCCYPRSGKPAADFGIHGLWPNRDDGSYPQNCDPDSEFD 84
+D+DFF+ V QWPGSYCDT++ CCYP SGKPAADFGIHGLWPN DG+YP NCD FD
Sbjct: 28 EDFDFFYFVQQWPGSYCDTQKKCCYPNSGKPAADFGIHGLWPNYKDGTYPSNCDASKPFD 87
Query: 85 PSKVSDLLGSMRSEWPTLACPSNDGIRFWAHEWEKHGTCAAAALGDEHGYFEAALRLRSR 144
S +SDLL SM+ WPTLACPS G FW HEWEKHGTC+ + + D+H YF+ AL L+ +
Sbjct: 88 SSTISDLLTSMKKSWPTLACPSGSGEAFWEHEWEKHGTCSESVI-DQHEYFQTALNLKQK 146
Query: 145 LPVLAALRDGGVSPDGGYYTLSQIKGAIQRGVGAEPFVECNRDESGNSQLYQLYFCVDAA 204
+L AL G++PDG Y+L I+ +I+ +G P+VECNRD SGNSQLYQ+Y CVD +
Sbjct: 147 TNLLGALTKAGINPDGKSYSLESIRDSIKESIGFTPWVECNRDGSGNSQLYQVYLCVDRS 206
Query: 205 GERFVDCPASPGGRPCGNRIEFPAF 229
G ++CP P G+ CG IEFP+F
Sbjct: 207 GSGLIECPVFPHGK-CGAEIEFPSF 230
>AT1G14220.1 | chr1:4858642-4859601 REVERSE LENGTH=229
Length = 228
Score = 268 bits (684), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 114/205 (55%), Positives = 157/205 (76%), Gaps = 2/205 (0%)
Query: 25 QDYDFFFLVLQWPGSYCDTKQSCCYPRSGKPAADFGIHGLWPNRDDGSYPQNCDPDSEFD 84
+D+DFF+ VLQWPG+YCDT ++CCYP SGKPAADFGIHGLWPN + GS+P NCDPDS+FD
Sbjct: 26 EDFDFFYFVLQWPGAYCDTSRACCYPTSGKPAADFGIHGLWPNYNGGSWPSNCDPDSQFD 85
Query: 85 PSKVSDLLGSMRSEWPTLACPSNDGIRFWAHEWEKHGTCAAAALGDEHGYFEAALRLRSR 144
S++SDL+ S++ WPTL+CPSN+G FW HEWEKHGTC+ + + D+H YFE AL+L+ +
Sbjct: 86 RSQISDLVSSLKKNWPTLSCPSNEGFNFWEHEWEKHGTCSESVM-DQHEYFENALKLKQK 144
Query: 145 LPVLAALRDGGVSPDGGYYTLSQIKGAIQRGVGAEPFVECNRDESGNSQLYQLYFCVDAA 204
+L L++ G++PD G+Y L +I AI+ G+G P +ECN+D N+QL+Q+Y CVD +
Sbjct: 145 ANLLQILKNSGINPDDGFYNLDKITNAIKDGIGFTPGIECNKDPERNAQLHQIYICVDTS 204
Query: 205 GERFVDCPASPGGRPCGNRIEFPAF 229
G F++CP P G C ++I+F F
Sbjct: 205 GTEFIECPVLPRGS-CPSQIQFSKF 228
>AT1G14210.1 | chr1:4856902-4857941 REVERSE LENGTH=248
Length = 247
Score = 201 bits (510), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 131/207 (63%), Gaps = 6/207 (2%)
Query: 26 DYDFFFLVLQWPGSYCDTKQSCCYPRSGKPAADFGIHGLWPNRDDGSYPQNCDPDSEFDP 85
D++FF+ V WPG+ CD+++ CC P G A+DF IHGLWP ++G++P CD + FD
Sbjct: 25 DFNFFYWVNYWPGAICDSQKGCCPPTKGNTASDFIIHGLWPQFNNGTWPAFCDQTNLFDI 84
Query: 86 SKVSDLLGSMR---SEWPTLACPSNDGIRFWAHEWEKHGTCAAAALGDEHGYFEAALRLR 142
SK+SDL+ M +EW ACPSN+ W HEW KHGTC + D+H YF L+ +
Sbjct: 85 SKISDLVCQMEKKWTEWGVWACPSNET-NLWEHEWNKHGTCVQSIF-DQHSYFRTNLKFK 142
Query: 143 SRLPVLAALRDGGVSPDGGYYTLSQIKGAIQRGVGAEPFVECNRDESGNSQLYQLYFCVD 202
++ +L L G+ P+ G+Y+L +IK AI+ +G P +ECN D GN QL+Q+Y C+D
Sbjct: 143 HKVHLLNILIQKGIKPNDGFYSLDEIKNAIKCAIGFAPGIECNEDVKGNKQLFQIYICLD 202
Query: 203 AAGERFVDCPASPGGRPCGNRIEFPAF 229
+ FV+CP P + C ++I+FP+
Sbjct: 203 NYAKEFVECPYVP-DKSCASKIKFPSL 228
>AT2G39780.1 | chr2:16591256-16593515 FORWARD LENGTH=260
Length = 259
Score = 120 bits (301), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 88/173 (50%), Gaps = 11/173 (6%)
Query: 25 QDYDFFFLVLQWPGSYCDTKQSCCYP----RSGKPAADFGIHGLWPNRDDGSYPQNCDPD 80
+++D+F L LQWPG+YC + CC R F IHGLWP+ +DGS+P C
Sbjct: 30 REFDYFALSLQWPGTYCRGTRHCCSKNACCRGSDAPTQFTIHGLWPDYNDGSWPSCC-YR 88
Query: 81 SEFDPSKVSDLLGSMRSEWPTLACPSNDGIR-----FWAHEWEKHGTCAAAALGDEHGYF 135
S+F ++S L+ + WP+L+C S FW HEWEKHGTC++ DE+ YF
Sbjct: 89 SDFKEKEISTLMDGLEKYWPSLSCGSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNYF 148
Query: 136 EAALRLRSRLPVLAALRDGG-VSPDGGYYTLSQIKGAIQRGVGAEPFVECNRD 187
L L + V L G V+ + Y L I AIQ P V C RD
Sbjct: 149 LTTLNLYLKHNVTDVLYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVCKRD 201
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.140 0.473
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,326,918
Number of extensions: 239052
Number of successful extensions: 391
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 5
Length of query: 229
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 134
Effective length of database: 8,502,049
Effective search space: 1139274566
Effective search space used: 1139274566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)