BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0433300 Os08g0433300|Os08g0433300
         (381 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26761.1  | chr1:9250269-9251603 REVERSE LENGTH=445            235   3e-62

>AT1G26761.1 | chr1:9250269-9251603 REVERSE LENGTH=445
          Length = 444

 Score =  235 bits (599), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 148/371 (39%), Positives = 196/371 (52%), Gaps = 53/371 (14%)

Query: 52  SPVVKRAPGG----WLLWYQCGAR-------VALAASTDGLRW---GPPVEPDP---LVA 94
           SPVVKR        W +WY   ++       + LA S +G+ W      VE      LV 
Sbjct: 86  SPVVKRFLSDNEERWYMWYHGSSKQNPVSDSIGLAVSNNGIHWERGNGKVESSEDVGLVM 145

Query: 95  ST--DWWAFDTAAVRPSDVLLFSGPDASARSGFPSSAVYWLYYSGSTDER---------- 142
           S   DWW FDTA+VRP +V++ S     A     +S+VYW+YY+G T E           
Sbjct: 146 SCGEDWWGFDTASVRPGEVVIMSSSKVRA-----NSSVYWMYYTGYTKETVEFQSQDFTS 200

Query: 143 -FGSPFPXXXXXXXXED----VPALPGLAISQDGRHWARIEGDHHTXXXXXXXXXXXXXX 197
             G+P          E       +LPGLAISQDGRHWARIEG+HH+              
Sbjct: 201 VLGNPERFHLCDENAEKSRVYYRSLPGLAISQDGRHWARIEGEHHSGALFDVGSEKDWDF 260

Query: 198 XXXXXXXRCVAAPKVVLHAEGDLRMYYHSFDEMSQRHAIGLARSKDGVRWRKAGKVLEGG 257
                    +A+P VV H +GDLRMYYHSFDE +    IG+ARS+DG++W K GK+L G 
Sbjct: 261 LY-------IASPHVVFHGDGDLRMYYHSFDEKTGEFCIGMARSRDGIKWLKLGKILGGR 313

Query: 258 KA-----GSFDEGGVRHGHVVRDRAAGRYVMVYEGVDANGRVSIGMAVSEDGLKGWRRSS 312
           K+     G FDE G R+  V R++    YVM YEGVD  G+ SIG AVS+DG+K W+R  
Sbjct: 314 KSEKDGLGFFDELGGRYPCVTRNKRDESYVMAYEGVDRTGKTSIGFAVSKDGIKDWKRVQ 373

Query: 313 ELPILRPSDDDEGWDSTVVGSPCLVQMDGAYD--WRMYYTGVGRDGEAAIGMAYSEGHGL 370
           +   +    +   WD+  VG P L++MDG  D  WR+YY GVG  G   IG+A S+G+ +
Sbjct: 374 DEEAVIAVGEGGAWDNEGVGCPYLIEMDGDSDHQWRLYYRGVGNGGRTGIGLAVSQGNVI 433

Query: 371 QKFEKWDAVLM 381
             F K   + +
Sbjct: 434 TSFTKQTGIHL 444



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,676,112
Number of extensions: 313533
Number of successful extensions: 571
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 281
Effective length of database: 8,364,969
Effective search space: 2350556289
Effective search space used: 2350556289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)