BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0432500 Os08g0432500|AK106170
         (162 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G68660.1  | chr1:25778058-25779083 REVERSE LENGTH=160          200   3e-52

>AT1G68660.1 | chr1:25778058-25779083 REVERSE LENGTH=160
          Length = 159

 Score =  200 bits (508), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 95/163 (58%), Positives = 119/163 (73%), Gaps = 5/163 (3%)

Query: 1   MEAAVPSRVALSASRLSNHHHHAVGGERYAIYRGRCXXXXXXXXXXXXXXXXXXXXVLDR 60
           ME A+  R+AL+ S L N       G+++ + +G C                    VLD+
Sbjct: 1   METAICGRLALAPSSLFNSKS----GDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDK 56

Query: 61  PI-EKVTPGRQSEFDVRKSRKMTPPYRVLLHNDNYNRREYVVQVLMKVIPGMTVDNAVNI 119
           PI EK TPGR+SEFD+RKS+K+ PPYRV+LHNDN+N+REYVVQVLMKVIPGMTVDNAVNI
Sbjct: 57  PIIEKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNI 116

Query: 120 MQEAHVNGLSVVIICSQSEAEEHCTSLRGNGLRSSIEPASGGC 162
           MQEAH+NGL+VVI+C+Q++AE+HC  LRGNGL SS+EP  GGC
Sbjct: 117 MQEAHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,881,834
Number of extensions: 89327
Number of successful extensions: 257
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 71
Effective length of database: 8,611,713
Effective search space: 611431623
Effective search space used: 611431623
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)