BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0423500 Os08g0423500|Os08g0423500
(276 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08080.1 | chr1:2517022-2518546 REVERSE LENGTH=276 232 1e-61
AT4G20990.1 | chr4:11219772-11221126 FORWARD LENGTH=268 216 9e-57
AT1G08065.1 | chr1:2511788-2513341 REVERSE LENGTH=278 210 7e-55
AT5G04180.1 | chr5:1147907-1149237 REVERSE LENGTH=278 186 1e-47
AT2G28210.1 | chr2:12029997-12032338 FORWARD LENGTH=218 186 2e-47
AT4G21000.1 | chr4:11222529-11223756 FORWARD LENGTH=261 184 3e-47
AT3G52720.1 | chr3:19538804-19541116 REVERSE LENGTH=285 178 3e-45
AT5G56330.1 | chr5:22813768-22816162 FORWARD LENGTH=351 153 7e-38
>AT1G08080.1 | chr1:2517022-2518546 REVERSE LENGTH=276
Length = 275
Score = 232 bits (592), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 109/240 (45%), Positives = 152/240 (63%), Gaps = 1/240 (0%)
Query: 32 EDDGYSYIPGSPRGPQNWGSLKPEWATCSSGKMQSPINXXXXXXXXXXXXXXXNYTYQNA 91
++ ++Y +GP+ WG LKPEW C G+MQSPI+ N Y +
Sbjct: 36 DEREFNYKKNDEKGPERWGELKPEWEMCGKGEMQSPIDLMNERVNIVSHLGRLNRDYNPS 95
Query: 92 NASVVNRGHDIMVRFDGDAGSLKINGTAYQLRQMHWHTPSEHTIDGRRYDMELHMVHLNA 151
NA++ NRGHDIM++F+ AG++KING Y+L+Q+HWH+PSEHTI+GRR+ +ELHMVH
Sbjct: 96 NATLKNRGHDIMLKFEDGAGTIKINGFEYELQQLHWHSPSEHTINGRRFALELHMVHEGR 155
Query: 152 QNQAAVIGILYTIGTRDEFLQKLEPYIIEISKQEGKERVIIGGADPNVAKGQDTVYYRYM 211
+ AV+ +LY IG D F++ LE + I++ E E+ +G DP K YYRY
Sbjct: 156 NRRMAVVTVLYKIGRADTFIRSLEKELEGIAEMEEAEKN-VGMIDPTKIKIGSRKYYRYT 214
Query: 212 GSFTTPPCTEGVIWTVVRKVRTVSLSQITLLKAAVLTGNENNARPLQGVNNREIDLFLPL 271
GS TTPPCT+ V W+VVRKVRTV+ Q+ LL+ AV +NARP+Q N R + L+ P+
Sbjct: 215 GSLTTPPCTQNVTWSVVRKVRTVTRKQVKLLRVAVHDDANSNARPVQPTNKRIVHLYRPI 274
>AT4G20990.1 | chr4:11219772-11221126 FORWARD LENGTH=268
Length = 267
Score = 216 bits (551), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 105/235 (44%), Positives = 145/235 (61%), Gaps = 5/235 (2%)
Query: 36 YSYIPGSPRGPQNWGSLKPEWATCSSGKMQSPINXXXXXXXXXXXXXXXNYTYQNANASV 95
++Y + +GP+ WG + P W C++G+ QSPI+ Y+ A A +
Sbjct: 36 FTYEQKTEKGPEGWGKINPHWKVCNTGRYQSPIDLTNERVSLIHDQAWTR-QYKPAPAVI 94
Query: 96 VNRGHDIMVRFDGDAGSLKINGTAYQLRQMHWHTPSEHTIDGRRYDMELHMVHLNAQNQA 155
NRGHDIMV + GDAG + I T + L Q HWH+PSEHT++G RYD+ELHMVH +A+ +
Sbjct: 95 TNRGHDIMVSWKGDAGKMTIRKTDFNLVQCHWHSPSEHTVNGTRYDLELHMVHTSARGRT 154
Query: 156 AVIGILYTIGTRDEFLQKLEPYIIEISKQEGKERVIIGGADPNVAKGQDTVYYRYMGSFT 215
AVIG+LY +G +EFL KL I K G + + +G DP + Q +YRY+GS T
Sbjct: 155 AVIGVLYKLGEPNEFLTKLLNGI----KAVGNKEINLGMIDPREIRFQTRKFYRYIGSLT 210
Query: 216 TPPCTEGVIWTVVRKVRTVSLSQITLLKAAVLTGNENNARPLQGVNNREIDLFLP 270
PPCTEGVIWTVV++V T+S+ QIT L+ AV G E N+RP+Q R + + P
Sbjct: 211 VPPCTEGVIWTVVKRVNTISMEQITALRQAVDDGFETNSRPVQDSKGRSVWFYDP 265
>AT1G08065.1 | chr1:2511788-2513341 REVERSE LENGTH=278
Length = 277
Score = 210 bits (534), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 151/242 (62%), Gaps = 5/242 (2%)
Query: 32 EDDGYSYIPGSPRGPQNWGSLKPEWATCSSGKMQSPINXXXXXXXXXXXXXXXNYTYQNA 91
++ ++Y +GP+NWG LKPEWA C G MQSPI+ Y +
Sbjct: 31 DETQFNYEKKGEKGPENWGRLKPEWAMCGKGNMQSPIDLTDKRVLIDHNLGYLRSQYLPS 90
Query: 92 NASVVNRGHDIMVRFDG-DAG-SLKINGTAYQLRQMHWHTPSEHTIDGRRYDMELHMVHL 149
NA++ NRGHDIM++F+G +AG + INGT Y+L+Q+HWH+PSEHT++G+R+ +E HMVH
Sbjct: 91 NATIKNRGHDIMMKFEGGNAGLGITINGTEYKLQQIHWHSPSEHTLNGKRFVLEEHMVHQ 150
Query: 150 NAQNQAAVIGILYTIGTRDEFLQKLEPYIIEISK-QEGKERVIIGGADPNVAKGQDTVYY 208
+ + AV+ Y +G D FL LE Y+ I+ E +E V + P + YY
Sbjct: 151 SKDGRNAVVAFFYKLGKPDYFLLTLERYLKRITDTHESQEFVEM--VHPRTFGFESKHYY 208
Query: 209 RYMGSFTTPPCTEGVIWTVVRKVRTVSLSQITLLKAAVLTGNENNARPLQGVNNREIDLF 268
R++GS TTPPC+E VIWT+ +++RTV+L Q+ +L+ V + +NARPLQ N R + L+
Sbjct: 209 RFIGSLTTPPCSENVIWTISKEMRTVTLKQLIMLRVTVHDQSNSNARPLQRKNERPVALY 268
Query: 269 LP 270
+P
Sbjct: 269 IP 270
>AT5G04180.1 | chr5:1147907-1149237 REVERSE LENGTH=278
Length = 277
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 134/241 (55%), Gaps = 2/241 (0%)
Query: 28 VAGAEDDGYSYIPGSPRGPQNWGSLKPEWATCSSGKMQSPINXXXXXXXXXXXXXXXNYT 87
+A + + Y PG P W S+K EW C +GK QSPIN T
Sbjct: 18 LADETETEFHYKPGEIADPSKWSSIKAEWKICGTGKRQSPINLTPKIARIVHNSTEILQT 77
Query: 88 Y-QNANASVVNRGHDIMVRFDGDAGSLKINGTAYQLRQMHWHTPSEHTIDGRRYDMELHM 146
Y + A + NRG D+ V+++ DAG + IN T Y+L Q HWH PSEH +DG+R MELHM
Sbjct: 78 YYKPVEAILKNRGFDMKVKWEDDAGKIVINDTDYKLVQSHWHAPSEHFLDGQRLAMELHM 137
Query: 147 VHLNAQNQAAVIGILYTIGTRDEFLQKLEPYIIEISKQEGKERVIIGGADPNVAKGQDTV 206
VH + + AVIG+L+ G + F+ ++ I +I+ + E V IG DP T
Sbjct: 138 VHKSVEGHLAVIGVLFREGEPNAFISRIMDKIHKIADVQDGE-VSIGKIDPREFGWDLTK 196
Query: 207 YYRYMGSFTTPPCTEGVIWTVVRKVRTVSLSQITLLKAAVLTGNENNARPLQGVNNREID 266
+Y Y GS TTPPCTE V+WT++ KV TVS QI +L A G E NARP Q +N R +
Sbjct: 197 FYEYRGSLTTPPCTEDVMWTIINKVGTVSREQIDVLTDARRGGYEKNARPAQPLNGRLVY 256
Query: 267 L 267
L
Sbjct: 257 L 257
>AT2G28210.1 | chr2:12029997-12032338 FORWARD LENGTH=218
Length = 217
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 123/203 (60%), Gaps = 2/203 (0%)
Query: 32 EDDGYSYIPGSPRGPQNWGSLKPEWATCSSGKMQSPINXXXXXXXXXXXXXXXNYTYQNA 91
++ +SY GP WG L+PEW C G+MQSPI+ Y+
Sbjct: 7 DEHEFSYEWNQENGPAKWGKLRPEWKMCGKGEMQSPIDLMNKRVRLVTHLKKLTRHYKPC 66
Query: 92 NASVVNRGHDIMVRFDGD-AGSLKINGTAYQLRQMHWHTPSEHTIDGRRYDMELHMVHLN 150
NA++ NRGHD+M++F + +GS+ +NGT Y+L Q+HWH+PSEHT++GRR+ +ELHMVH N
Sbjct: 67 NATLKNRGHDMMLKFGEEGSGSITVNGTEYKLLQLHWHSPSEHTMNGRRFALELHMVHEN 126
Query: 151 AQNQAAVIGILYTIGTRDEFLQKLEPYIIEISKQEGKERVIIGGADPNVAKGQDTVYYRY 210
AV+ +LY IG D FL LE + I+ Q E+ + DP K +YRY
Sbjct: 127 INGSLAVVTVLYKIGRPDSFLGLLENKLSAITDQNEAEKY-VDVIDPRDIKIGSRKFYRY 185
Query: 211 MGSFTTPPCTEGVIWTVVRKVRT 233
+GS TTPPCT+ VIWTVV+KV T
Sbjct: 186 IGSLTTPPCTQNVIWTVVKKVNT 208
>AT4G21000.1 | chr4:11222529-11223756 FORWARD LENGTH=261
Length = 260
Score = 184 bits (468), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 123/196 (62%), Gaps = 5/196 (2%)
Query: 36 YSYIPGSPRGPQNWGSLKPEWATCSSGKMQSPINXXXXXXXXXXXXXXXNYTYQNANASV 95
++Y + +GP WG L P+W CS+GK+QSPI+ + Y+ A+A +
Sbjct: 37 FTYKQKTEKGPAEWGKLDPQWKVCSTGKIQSPIDLTDERVSLIHDQALSKH-YKPASAVI 95
Query: 96 VNRGHDIMVRFDGDAGSLKINGTAYQLRQMHWHTPSEHTIDGRRYDMELHMVHLNAQNQA 155
+RGHD+MV + GD G + I+ T Y+L Q HWH+PSEHTI+G YD+ELHMVH +A +
Sbjct: 96 QSRGHDVMVSWKGDGGKITIHQTDYKLVQCHWHSPSEHTINGTSYDLELHMVHTSASGKT 155
Query: 156 AVIGILYTIGTRDEFLQKLEPYIIEISKQEGKERVIIGGADPNVAKGQDTVYYRYMGSFT 215
V+G+LY +G DEFL K I+ K GK+ + +G DP + + +YRY+GS T
Sbjct: 156 TVVGVLYKLGEPDEFLTK----ILNGIKGVGKKEIDLGIVDPRDIRFETNNFYRYIGSLT 211
Query: 216 TPPCTEGVIWTVVRKV 231
PPCTEGVIWTV ++V
Sbjct: 212 IPPCTEGVIWTVQKRV 227
>AT3G52720.1 | chr3:19538804-19541116 REVERSE LENGTH=285
Length = 284
Score = 178 bits (451), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 137/244 (56%), Gaps = 4/244 (1%)
Query: 29 AGAEDDGYSYIPGSPRGPQNWGSLKPEWATCSSGKMQSPINXXXXXXXXXXXXXXXNYTY 88
A A+ +G + GP WG L P + TC+ GK+QSPI+ + Y
Sbjct: 22 ADAQTEGVVFGYKGKNGPNQWGHLNPHFTTCAVGKLQSPIDIQRRQIFYNHKLNSIHREY 81
Query: 89 QNANASVVNRGHDIMVRFDGDAGSLKINGTAYQLRQMHWHTPSEHTIDGRRYDMELHMVH 148
NA++VN ++ + F AG + I Y L QMHWHTPSEH + G +Y ELHMVH
Sbjct: 82 YFTNATLVNHVCNVAMFFGEGAGDVIIENKNYTLLQMHWHTPSEHHLHGVQYAAELHMVH 141
Query: 149 LNAQNQAAVIGILYTIGTRDEFLQKLEPYIIEISKQEGK----ERVIIGGADPNVAKGQD 204
AV+ L+ IGT + FL +++ ++++ ++ K +V +G D + +
Sbjct: 142 QAKDGSFAVVASLFKIGTEEPFLSQMKEKLVKLKEERLKGNHTAQVEVGRIDTRHIERKT 201
Query: 205 TVYYRYMGSFTTPPCTEGVIWTVVRKVRTVSLSQITLLKAAVLTGNENNARPLQGVNNRE 264
YYRY+GS TTPPC+E V WT++ KVR++S Q+ LL++ + T +NN+RP Q +N R
Sbjct: 202 RKYYRYIGSLTTPPCSENVSWTILGKVRSMSKEQVELLRSPLDTSFKNNSRPCQPLNGRR 261
Query: 265 IDLF 268
+++F
Sbjct: 262 VEMF 265
>AT5G56330.1 | chr5:22813768-22816162 FORWARD LENGTH=351
Length = 350
Score = 153 bits (387), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 118/241 (48%), Gaps = 42/241 (17%)
Query: 32 EDDGYSYIPGSPRGPQNWGSLKPEWATCSSGKMQSPINXXXXXXXXXXXXXXXNYTYQNA 91
++ +SY +GP WG+L EW C GKMQSPI+ Y +
Sbjct: 136 DETEFSYETKGNKGPAKWGTLDAEWKMCGIGKMQSPIDLRDKNVVVSNKFGLLRSQYLPS 195
Query: 92 NASVVNRGHDIMVRFDGDAGSL--KINGTAYQLRQMHWHTPSEHTIDGRRYDMELHMVHL 149
N ++ NRGHDIM++F G + I GT YQL+Q+HWH+PSEHTI+G+R+ +E H+VH
Sbjct: 196 NTTIKNRGHDIMLKFKGGNKGIGVTIRGTRYQLQQLHWHSPSEHTINGKRFALEEHLVHE 255
Query: 150 NAQNQAAVIGILYTIGTRDEFLQKLEPYIIEISKQEGKERVIIGGADPNVAKGQDTVYYR 209
+ + AV+ LY +G D FL LE + +I+ E
Sbjct: 256 SKDKRYAVVAFLYNLGASDPFLFSLEKQLKKITDTHASE--------------------- 294
Query: 210 YMGSFTTPPCTEGVIWTVVRKVRTVSLSQITLLKAAVLTGNENNARPLQGVNNREIDLFL 269
+RTVS Q+ LL+ AV +++NARPLQ VN R++ L+
Sbjct: 295 -------------------EHIRTVSSKQVKLLRVAVHDASDSNARPLQAVNKRKVYLYK 335
Query: 270 P 270
P
Sbjct: 336 P 336
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,481,067
Number of extensions: 210448
Number of successful extensions: 367
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 8
Length of query: 276
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 179
Effective length of database: 8,447,217
Effective search space: 1512051843
Effective search space used: 1512051843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)