BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0414300 Os08g0414300|AK072217
         (172 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G38060.2  | chr4:17873709-17874379 REVERSE LENGTH=137           56   1e-08
AT5G65480.1  | chr5:26176827-26177434 FORWARD LENGTH=154           46   8e-06

>AT4G38060.2 | chr4:17873709-17874379 REVERSE LENGTH=137
          Length = 136

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 7/71 (9%)

Query: 107 WSIGWLEPQGPELHSDGD-SDGSFAVLVPCYR---HGRCRVEEP---GRGRLADGNVSGG 159
           WS+GW EP GP+  SD + +DG F VLVPCYR    G              L +G    G
Sbjct: 63  WSVGWTEPHGPDFQSDDEGNDGGFLVLVPCYRAVVEGSSNNNNQLLSAVKNLPNGLPPDG 122

Query: 160 KNFVERWLSSL 170
           KN++E+WLSSL
Sbjct: 123 KNYMEQWLSSL 133



>AT5G65480.1 | chr5:26176827-26177434 FORWARD LENGTH=154
          Length = 153

 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 9/68 (13%)

Query: 107 WSIGWLEPQGPELHSDGDSDGSFAVLVPCYRHGRCRVEEPGRGRLADGNVS----GGKNF 162
           WSIGW+EP GP   ++ D  G F VLVP Y+    +V +    ++ +G  S     GKN 
Sbjct: 88  WSIGWVEPHGPGFKAEDDDCGGFVVLVPLYK----KVMDGSGNQIPNGFFSPAAPDGKN- 142

Query: 163 VERWLSSL 170
           +E+WLSS+
Sbjct: 143 MEQWLSSM 150



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.140    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,888,670
Number of extensions: 89771
Number of successful extensions: 142
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 2
Length of query: 172
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 80
Effective length of database: 8,584,297
Effective search space: 686743760
Effective search space used: 686743760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)