BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0410300 Os08g0410300|J100026P19
(389 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G10190.1 | chr5:3199205-3201140 FORWARD LENGTH=489 351 4e-97
AT1G78130.1 | chr1:29400171-29401814 FORWARD LENGTH=491 337 6e-93
AT4G36790.1 | chr4:17336360-17338304 FORWARD LENGTH=490 223 2e-58
AT2G18590.1 | chr2:8069988-8072866 FORWARD LENGTH=474 191 6e-49
>AT5G10190.1 | chr5:3199205-3201140 FORWARD LENGTH=489
Length = 488
Score = 351 bits (901), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 180/382 (47%), Positives = 235/382 (61%), Gaps = 16/382 (4%)
Query: 9 QMAISRGLNGVGLALVLPAISSLVADYTDDHTRGAAFGWLQMTCNLGSIMGGSFGVLLAP 68
Q+A+SRGLNG+GLA+V PAI SLVAD TDD+ RG AFGWL T N+GSI+G +L A
Sbjct: 96 QVAVSRGLNGIGLAIVTPAIQSLVADSTDDYNRGMAFGWLGFTSNIGSILGYVCSILFAS 155
Query: 69 VTFLGVAGWRLAFHAVALVSAVLGILMWCFAADPXXXXXXXXXXXXXX------XXXXXX 122
+F GVAGWR+AF VA+VS ++GIL+ FA DP
Sbjct: 156 KSFNGVAGWRIAFLLVAVVSVIVGILVRLFATDPHYSDRKITKHVKDKPFWSDIRDLLKE 215
Query: 123 XXGVIGVPTFQIIVAQGIAGSIPWSALNFSAMWLELVGFTHWETSVITXXXXXXXXXXXX 182
VI +P+FQI VAQG++GS PWSAL F+ +WLEL+GF+H T+V+
Sbjct: 216 AKMVIKIPSFQIFVAQGVSGSFPWSALAFAPLWLELIGFSHKTTAVLVTLFTISCSLGGL 275
Query: 183 XXXXXXDPVSRRFPNTGRIXXXXXXXXXXXXXXXXXXXXXPNDPSTGVAHAAVFFIMGFA 242
D ++++FPN GRI P+DPST +H V IMG
Sbjct: 276 FGGYMGDTLAKKFPNGGRIFLSQVSSGSAIPLAAILLIGLPDDPSTAFSHGLVLVIMGLC 335
Query: 243 ISWNA-----PIFAEIVPEKARTTVYALDKCFEAVFASFAPPIVGVLAEQVFGYKPV--- 294
ISWN PIFAEIVPE+ART++YALD+ FE++ ASFAPPIVG+LA+ ++GYKP+
Sbjct: 336 ISWNGAATNGPIFAEIVPERARTSIYALDRSFESILASFAPPIVGMLAQNIYGYKPIPEG 395
Query: 295 -SSDASVETDRENAAALAKAVYTEIAVPMAICCLTYTFLYCTYPRDRDRARRNILMASD- 352
+S ++TDR NAA+LAKA+YT I +PM ICC Y+FLYCTYPRDRDRA+ L+ S+
Sbjct: 396 STSSVKIDTDRANAASLAKALYTSIGIPMVICCTIYSFLYCTYPRDRDRAKMQALIESEM 455
Query: 353 DQLCQEAGESDSSEICTQEDEE 374
QL +E E + +E +E
Sbjct: 456 QQLNEEEDEIEVKCFGAEEHDE 477
>AT1G78130.1 | chr1:29400171-29401814 FORWARD LENGTH=491
Length = 490
Score = 337 bits (864), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 180/387 (46%), Positives = 238/387 (61%), Gaps = 21/387 (5%)
Query: 9 QMAISRGLNGVGLALVLPAISSLVADYTDDHTRGAAFGWLQMTCNLGSIMGGSFGVLLAP 68
Q+A+SR LNG+GLALV PAI SLVAD TDD RG AFGWLQ+T N+GSI+GG VL+AP
Sbjct: 96 QVAVSRALNGIGLALVAPAIQSLVADSTDDANRGTAFGWLQLTANIGSILGGLCSVLIAP 155
Query: 69 VTFLGVAGWRLAFHAVALVSAVLGILMWCFAADPXXXXXXXXXXX---------XXXXXX 119
+TF+G+ GWR+AFH V ++S ++G+L+ FA DP
Sbjct: 156 LTFMGIPGWRVAFHIVGVISVIVGVLVRVFANDPHFVKDGVDVSNQPGSRKPFCTEVKDL 215
Query: 120 XXXXXGVIGVPTFQIIVAQGIAGSIPWSALNFSAMWLELVGFTHWETSVITXXXXXXXXX 179
VI + +FQIIVAQG+ GS PWSAL+F+ MWLEL+GF+H +T+ +
Sbjct: 216 VREADTVIKIRSFQIIVAQGVTGSFPWSALSFAPMWLELIGFSHGKTAFLMGLFVAASSL 275
Query: 180 XXXXXXXXXDPVSRRFPNTGRIXXXXXXXXXXXXXXXXXXXXXPNDPSTGVAHAAVFFIM 239
D +S R PN+GRI P+DPST H + ++
Sbjct: 276 GGLFGGKMGDFLSTRLPNSGRIILAQISSASAIPLAAILLLVLPDDPSTAAIHGLILVLL 335
Query: 240 GFAISWNAP-----IFAEIVPEKARTTVYALDKCFEAVFASFAPPIVGVLAEQVFGYKPV 294
G +SWNAP IFAEIVPEK+RT+VYALDK FE++ +SFAPPIVG+LA+ V+GYKP+
Sbjct: 336 GLFVSWNAPATNNPIFAEIVPEKSRTSVYALDKSFESILSSFAPPIVGILAQHVYGYKPI 395
Query: 295 ----SSDASVETDRENAAALAKAVYTEIAVPMAICCLTYTFLYCTYPRDRDRARRNILMA 350
S + TDRENAA+LAKA+YT I +PMA CC Y+FLY +YP DRDRAR +
Sbjct: 396 PEGSSRSTEIATDRENAASLAKALYTSIGLPMAACCFIYSFLYRSYPLDRDRARMEAFI- 454
Query: 351 SDDQLCQEAGESDSSEI-CTQEDEEFA 376
D ++ + ES + +I +QE++ FA
Sbjct: 455 -DSEMRELLPESSNRDIEFSQEEDPFA 480
>AT4G36790.1 | chr4:17336360-17338304 FORWARD LENGTH=490
Length = 489
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/347 (36%), Positives = 181/347 (52%), Gaps = 11/347 (3%)
Query: 9 QMAISRGLNGVGLALVLPAISSLVADYTDDHTRGAAFGWLQMTCNLGSIMGGSFGVLLAP 68
Q+A+ R +NG GLA+V+PA+ S +AD D RGA FG L + +G I GG ++A
Sbjct: 133 QVALWRAVNGFGLAIVIPALQSFIADSYKDGARGAGFGMLNLIGTIGGIGGGVVATVMAG 192
Query: 69 VTFLGVAGWRLAFHAVALVSAVLGILMWCFAADPXXXXXXXXXXXXXXXX------XXXX 122
F G+ GWR AF +A +SAV+G+L++ F DP
Sbjct: 193 SEFWGIPGWRCAFIMMAALSAVIGLLVFLFVVDPRKNIEREELMAHKMNSNSVWNDSLAA 252
Query: 123 XXGVIGVPTFQIIVAQGIAGSIPWSALNFSAMWLELVGFTHWETSVITXXXXXXXXXXXX 182
V+ V TFQIIVAQGI GS PW+A+ F MW EL+GF H +T+ +
Sbjct: 253 AKSVVKVSTFQIIVAQGIIGSFPWTAMVFFTMWFELIGFDHNQTAALLGVFATGGAIGTL 312
Query: 183 XXXXXXDPVSRRFPNTGRIXXXXXXXXXXXXXXXXXXXXXPNDPSTGVAHAAVFFIMGFA 242
D +SR +PN+GR+ P S+ + F+MG
Sbjct: 313 MGGIIADKMSRIYPNSGRVMCAQFSAFMGIPFSIILLKVIPQSTSSYSIFSITLFLMGLT 372
Query: 243 ISW-----NAPIFAEIVPEKARTTVYALDKCFEAVFASFAPPIVGVLAEQVFGYKPVSSD 297
I+W NAP+FAE+VP + RT +YA D+ FE F+SFA P+VG+L+E++FGY D
Sbjct: 373 ITWCGSAVNAPMFAEVVPPRHRTMIYAFDRAFEGSFSSFAAPLVGILSEKLFGYDSRGID 432
Query: 298 ASVETDRENAAALAKAVYTEIAVPMAICCLTYTFLYCTYPRDRDRAR 344
+ A AL+K + + +AVP +CCL YT L+ + +DR+ A+
Sbjct: 433 PLKGSSVREADALSKGLLSMMAVPFGLCCLCYTPLHFVFQKDRENAK 479
>AT2G18590.1 | chr2:8069988-8072866 FORWARD LENGTH=474
Length = 473
Score = 191 bits (485), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 119/372 (31%), Positives = 176/372 (47%), Gaps = 31/372 (8%)
Query: 9 QMAISRGLNGVGLALVLPAISSLVADYTDDHTRGAAFGWLQMTCNLGSIMGGSFGVLLAP 68
Q+ + NGVG A+V P + S++AD + +RG FG + +G I G ++A
Sbjct: 103 QVTLGVAFNGVGHAIVYPVLQSIIADSFKESSRGFGFGLWNLIGTVGGIGGTVVPTVMAG 162
Query: 69 VTFLGVAGWRLAFHAVALVSAVLGILMWCFAADPXXXXXXXXXXXXXXXXXXXXXXG--- 125
F G++GWR AF A +S ++GIL++ F +DP G
Sbjct: 163 HDFFGISGWRCAFILSATLSTIVGILVFFFVSDPREKKTSSVIVHHDDQHERDENNGGTM 222
Query: 126 ------------------VIGVPTFQIIVAQGIAGSIPWSALNFSAMWLELVGFTHWETS 167
V + TFQIIV QGI GS+PW+A+ F MW EL+GF H + +
Sbjct: 223 MESPSSSVWKESWVAIKDVTKLRTFQIIVLQGIVGSVPWNAMLFWTMWFELIGFDHNQAA 282
Query: 168 VITXXXXXXXXXXXXXXXXXXDPVSRRFPNTGRIXXXXXXXXXXXXXXXXXXXXXPNDPS 227
++ D +SR FPN+GR+ P +
Sbjct: 283 LLNGIFATGQAIGSLVGGIIADKMSRVFPNSGRLICAQFSVFMGAMFSIVLLRMIPQSVN 342
Query: 228 TGVAHAAVFFIMGFAISW-----NAPIFAEIVPEKARTTVYALDKCFEAVFASFAPPIVG 282
+ F+MG I+W N+PI AEIVP K RT VYA D+ E F+SF P+VG
Sbjct: 343 SFYIFLVTLFLMGLTITWCGPAINSPILAEIVPAKHRTMVYAFDRALEVTFSSFGAPLVG 402
Query: 283 VLAEQVFGYKPVSSDASVETDRENAAALAKAVYTEIAVPMAICCLTYTFLYCTYPRDR-- 340
+++E++FG+ D ++ RE A AL K + +A+P +CCL YT L+ + +DR
Sbjct: 403 IMSEKLFGFDAKGIDHVNDSGRE-AEALGKGIMWMMALPFGLCCLCYTPLHFLFRKDRKI 461
Query: 341 DR--ARRNILMA 350
DR + R + MA
Sbjct: 462 DRTTSSREVEMA 473
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,813,465
Number of extensions: 232932
Number of successful extensions: 731
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 720
Number of HSP's successfully gapped: 7
Length of query: 389
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 289
Effective length of database: 8,364,969
Effective search space: 2417476041
Effective search space used: 2417476041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 113 (48.1 bits)