BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0396700 Os08g0396700|AK106592
(486 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G16050.1 | chr2:6980450-6981939 FORWARD LENGTH=244 99 5e-21
AT2G37800.1 | chr2:15841039-15843610 REVERSE LENGTH=397 74 2e-13
AT2G37820.1 | chr2:15847541-15848413 FORWARD LENGTH=291 64 2e-10
AT2G37810.1 | chr2:15845350-15846051 REVERSE LENGTH=234 59 8e-09
AT1G20990.1 | chr1:7330524-7331946 REVERSE LENGTH=320 55 8e-08
AT2G44380.1 | chr2:18323590-18324333 REVERSE LENGTH=248 52 7e-07
>AT2G16050.1 | chr2:6980450-6981939 FORWARD LENGTH=244
Length = 243
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 103/191 (53%), Gaps = 20/191 (10%)
Query: 274 HTDHMHENLRLDKSVRSWPTQCDGCKELGAGHRFKCEQCN-SKVYYDMC--CATAPHTLK 330
H H NL+ D + + P +CDGC E+G G R++C N +D+ CA ++
Sbjct: 8 HFSHPQHNLKFDYTEK--PFKCDGCNEVGIGSRYRCSGDNHGSCDFDLHAHCALPSASIT 65
Query: 331 HPLFPGSVFRFLRKPLASECGRACDACGDLMHGFVYHCFERGLDLHPRCARLPVRTANVK 390
HP + F+F+ +P +E R C+AC + GF+YHC G DLHP CA LP+ + +
Sbjct: 66 HPFYKKCTFQFVARPPGNE-RRYCNACEKDVSGFLYHCKACGFDLHPCCAMLPMVLDDGE 124
Query: 391 GYVMELRRV-SACSRCCICMCGKEGYRNKFWSYRSSQEGQDINVHMACLKDLASKSHETL 449
+ R+V S+C R CGK+G + WSYRSS + N+H+AC++++ E
Sbjct: 125 TNLFLYRKVSSSCHR-----CGKKG---RSWSYRSSC--KKYNLHVACVREMLV---ENW 171
Query: 450 TKLYEILMGES 460
+LY G+S
Sbjct: 172 RELYTGQHGKS 182
>AT2G37800.1 | chr2:15841039-15843610 REVERSE LENGTH=397
Length = 396
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 89/192 (46%), Gaps = 19/192 (9%)
Query: 274 HTDHMHENLRLDKSVRSWPTQCDGCKELGAGHRFKCEQCNSKVYYDMCCATAPHTLKHPL 333
H H+H ++D CDGCK G G ++C +C+ ++ CAT P TL +
Sbjct: 147 HFTHIHPLTKVDGYGE---FTCDGCKTYGFGKTYRCTRCDYNLHDH--CATCPSTLATFM 201
Query: 334 FPGSVFRFL-RKPLAS-ECGRACDACGDLMHGFVYHCFERGLDLHPRCARLP--VRTANV 389
P R + R P + + R CD C + G Y C G D+HP C +LP VR
Sbjct: 202 HPQHELRLVFRGPEHTHQNKRMCDICDESAEGLYYQCEPCGFDVHPLCTQLPQHVRHVPH 261
Query: 390 KGYVMELRRVSACSRCCICMCGKEGYRNKFWSYRSSQEGQDINVHMACLKDLASKSHETL 449
+++EL + A S ICM + R+ W Y+ G ++VHM C+ AS +
Sbjct: 262 PAHLLELSQWGASS---ICMVCRGAIRS--WRYKCGPCG--LDVHMECISSSASVA---A 311
Query: 450 TKLYEILMGESQ 461
TK+ + G Q
Sbjct: 312 TKIQQRCFGSPQ 323
>AT2G37820.1 | chr2:15847541-15848413 FORWARD LENGTH=291
Length = 290
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 16/156 (10%)
Query: 295 CDGCKELGAGHRFKCEQCNSKVYYDM--CCATAPHTLKHPLFPGSVFRFLRKPLAS--EC 350
CDGCK G+G ++CE CN YD+ CAT P TL + P + + S +
Sbjct: 31 CDGCKTYGSGKTYRCEPCN----YDLHEYCATCPLTLPTFIHPQHELSLVVRKQQSTRQN 86
Query: 351 GRACDACGDLMHGFVYHCFERGLDLHPRCARLPVRTANVKGYVMELR-RVSACSRCCICM 409
RACD C + + G Y C D+HP C +LP +V L R S S C +C
Sbjct: 87 DRACDICDESVEGLFYRCKICEFDVHPLCTQLPQHVRHVLHPAHHLEFRPSGASTCMVCH 146
Query: 410 CGKEGYRNKFWSYRSSQEGQDINVHMACLKDLASKS 445
+ W YR E ++HM C+ + + S
Sbjct: 147 GPCQS-----WRYRC--ELCRFDIHMECILAVCNTS 175
>AT2G37810.1 | chr2:15845350-15846051 REVERSE LENGTH=234
Length = 233
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 76/181 (41%), Gaps = 18/181 (9%)
Query: 274 HTDHMHENLRLDKSVRSWPTQCDGCKELGAGHRFKCEQCNSKVYYDMCCATAPHTLKHPL 333
H H H ++D+ C GCK G G ++C C+ V +D C AT P TL +
Sbjct: 13 HFSHTHPLTKVDEYGE---FTCGGCKTYGFGKTYRCAPCD-YVLHDHC-ATCPFTLISFM 67
Query: 334 FPGSVFRFLRKPLASECGRACDACGDLMHGFVYHCFERGLDLHPRCARLPVRTANV--KG 391
P R SE C+ C L+ G YHC G D+HP C + + V
Sbjct: 68 HPQHELRLFVN--GSE--NMCNICHRLVEGVYYHCETCGFDVHPLCTQHHQHVSYVPHPA 123
Query: 392 YVMELRRVSACSRCCICMCGKEGYRNKFWSYRSSQEGQDINVHMACLKDLASKSHETLTK 451
+++EL + A + C +C R S+R ++VH+ C+ A + E
Sbjct: 124 HLLELSQCGASNTCMVC-------RGAILSWRYKCGPCMLDVHVECVNSSAPAATEPQMD 176
Query: 452 L 452
L
Sbjct: 177 L 177
>AT1G20990.1 | chr1:7330524-7331946 REVERSE LENGTH=320
Length = 319
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 7/161 (4%)
Query: 221 VSAKICIAGTSEANRMAIASVLNNAIRQNTRISSVIIRFINRVIKDLPIVPTPHTDHMHE 280
+SA + ++ + A V N + + R SV ++++ +V H H+
Sbjct: 20 ISATTALRRSASNTTPSAAVVRTNDLNKKPRPRSVEFPASPQLVQGEEMVHFGHPQHVLV 79
Query: 281 NLRLDKSVRSWPTQCDGCKELGAGHRFKCEQCNSKVYYDMCCATAPHTLKHPLFPGSVFR 340
+ L C GCKE GAG R+ C++C+ ++ ++ C P HP
Sbjct: 80 KVELPDIY-----TCAGCKEEGAGVRYVCQECDYQL-HEFCALAPPQLKSHPFHYQHQLL 133
Query: 341 FLRKPLASECGRA-CDACGDLMHGFVYHCFERGLDLHPRCA 380
F KP ++ CD CG G+ + C +HP CA
Sbjct: 134 FFAKPAKGGIVKSKCDVCGRSPKGYTFRCKACSFQMHPGCA 174
>AT2G44380.1 | chr2:18323590-18324333 REVERSE LENGTH=248
Length = 247
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
Query: 274 HTDHMHENLRLDKSVRSWPTQCDGCKELGAGHRFKCEQCNSKVYYDMCCATAPHTLKHPL 333
H H H LR+ K+ C GC+ G FKC + + + C P H
Sbjct: 14 HASHNHP-LRVFKARDEDEVVCSGCELELTGQAFKCMKSDCDYFLHKSCFDLPRETNHKS 72
Query: 334 FPGSVFRFLRKPLASECGRACDACGDLMHGFVYHCFERGLDLHPRCARLP 383
P L P + CDACG+ GF Y+C E D+H CA +P
Sbjct: 73 HPNHSLTLLHSPPYGQ-SYTCDACGEYGSGFTYNCSECQYDVHVGCAFIP 121
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.138 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,978,717
Number of extensions: 396800
Number of successful extensions: 1706
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 1744
Number of HSP's successfully gapped: 17
Length of query: 486
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 384
Effective length of database: 8,310,137
Effective search space: 3191092608
Effective search space used: 3191092608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 114 (48.5 bits)