BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0395300 Os08g0395300|J065158M06
(100 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G19790.1 | chr2:8527302-8528395 FORWARD LENGTH=144 187 8e-49
AT1G47830.1 | chr1:17613346-17614784 REVERSE LENGTH=143 97 2e-21
AT4G35410.2 | chr4:16832572-16833796 FORWARD LENGTH=163 97 2e-21
AT2G17380.1 | chr2:7553122-7554887 FORWARD LENGTH=162 95 6e-21
AT3G50860.1 | chr3:18902346-18903959 FORWARD LENGTH=167 74 1e-14
>AT2G19790.1 | chr2:8527302-8528395 FORWARD LENGTH=144
Length = 143
Score = 187 bits (476), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 87/99 (87%), Positives = 95/99 (95%)
Query: 1 MGIRFVLFVNKQGQTRLAQYYEHLSIDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVY 60
MGIRF+L VNKQGQTRLAQYYE L+++ERRALEGEIVRKCLAR DQQCSFVEHRNYK+VY
Sbjct: 1 MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVY 60
Query: 61 RRYASLFFLVGVDNDENELAILEFIHLFVETMDRHFGNV 99
RRYASLFF+VGVD+DENELAILEFIHL VETMD+HFGNV
Sbjct: 61 RRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNV 99
>AT1G47830.1 | chr1:17613346-17614784 REVERSE LENGTH=143
Length = 142
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 66/97 (68%)
Query: 3 IRFVLFVNKQGQTRLAQYYEHLSIDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRR 62
IRF+L N+QG+TRLA+YY L E+ +E E+ R + R + +FVE R +KV+YRR
Sbjct: 2 IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYRR 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLFVETMDRHFGNV 99
YA LFF V VD +NELA LE IHLFVE +D F NV
Sbjct: 62 YAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNV 98
>AT4G35410.2 | chr4:16832572-16833796 FORWARD LENGTH=163
Length = 162
Score = 96.7 bits (239), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 67/97 (69%)
Query: 3 IRFVLFVNKQGQTRLAQYYEHLSIDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRR 62
I FVL V++QG+ RL ++Y + ER + E+ L R + C+FVE R YKVVY+R
Sbjct: 2 IHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYKR 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLFVETMDRHFGNV 99
YASL+F + +D ++NEL +LE IH +VE +DR+FG+V
Sbjct: 62 YASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSV 98
>AT2G17380.1 | chr2:7553122-7554887 FORWARD LENGTH=162
Length = 161
Score = 95.1 bits (235), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 66/97 (68%)
Query: 3 IRFVLFVNKQGQTRLAQYYEHLSIDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRR 62
I FVL V++QG+ RL ++Y + ER + E+ L R + C+F+E R YKVVY+R
Sbjct: 2 IHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYKR 61
Query: 63 YASLFFLVGVDNDENELAILEFIHLFVETMDRHFGNV 99
YASL+F + +D +NEL +LE IH +VE +DR+FG+V
Sbjct: 62 YASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSV 98
>AT3G50860.1 | chr3:18902346-18903959 FORWARD LENGTH=167
Length = 166
Score = 73.9 bits (180), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 66/102 (64%), Gaps = 5/102 (4%)
Query: 3 IRFVLFVNKQGQTRLAQYYEHLSIDERRALEGEIVRKCLARTDQQCSFVE-----HRNYK 57
I+ V+ +N QG+ RLA++Y++L +++++ L + +R + +F+E + +
Sbjct: 2 IKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDSR 61
Query: 58 VVYRRYASLFFLVGVDNDENELAILEFIHLFVETMDRHFGNV 99
+VY+ YA+L+F++ D ENELA+L+ I + VET+D+ F NV
Sbjct: 62 LVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNV 103
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.330 0.143 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,024,132
Number of extensions: 68405
Number of successful extensions: 190
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 5
Length of query: 100
Length of database: 11,106,569
Length adjustment: 70
Effective length of query: 30
Effective length of database: 9,187,449
Effective search space: 275623470
Effective search space used: 275623470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)