BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0387500 Os08g0387500|AK105106
         (440 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19540.1  | chr5:6595748-6597724 FORWARD LENGTH=463            504   e-143

>AT5G19540.1 | chr5:6595748-6597724 FORWARD LENGTH=463
          Length = 462

 Score =  504 bits (1297), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 249/387 (64%), Positives = 302/387 (78%), Gaps = 12/387 (3%)

Query: 55  ITDYLRY-RRPXXXXXXXXXXXXXXELQTAVVRYEKRLPWSLIHPFLHVDLVSTVHIADK 113
           I DY+R+ RRP              ELQTA+V Y+KR PW L++PFL VDLVST+HIADK
Sbjct: 76  IADYMRFKRRPDPGNGTS-------ELQTAIVSYKKRFPWILLNPFLQVDLVSTIHIADK 128

Query: 114 EYFDRLQQALQDYDCVLYEMVTSRENLNNRKDPTFAKKLKSSR-RGFSILGFIQKQMANI 172
           EYF  LQ+ L+ YD +LYEMV S+E L NR++P  +K+LKSSR RGFSILGFIQ+QMA +
Sbjct: 129 EYFTTLQKELEPYDSILYEMVASKETLENRRNPIASKRLKSSRSRGFSILGFIQRQMARV 188

Query: 173 LSLDYQLDCLDYGSEKWQHADLDFETFKQLQSERGESLFTFAVDMTLKSTKALVQPTL-P 231
           L+LD+QLDCLDY +E W HADLDFETF+ LQ E+GES F+FA DMT++STKA++QP L  
Sbjct: 189 LTLDFQLDCLDYDTENWYHADLDFETFQLLQKEKGESFFSFARDMTIRSTKAMIQPALVT 248

Query: 232 DGLDFWRSKLLWASRVLPMPLVGLFLISGLCLPIDDQ-GGYPELEALSRLDFGAALKIFL 290
           +G D WRSKLLW SRV PMPLVGLFLI   C    DQ   YPELEALSRLDFGAA+K+FL
Sbjct: 249 EGRDTWRSKLLWVSRVFPMPLVGLFLIGAFCADFGDQTSDYPELEALSRLDFGAAMKVFL 308

Query: 291 AKQLTSDFTSMTSPIEEKSVIIGERNRVATEKIQEAINHGYKRIAVLYGGGHMPDLGRRL 350
           AK+LTS+ T  TS IEEKSVIIGERNR ATE ++ AI  G+KRI +LYGGGHMPDLGRRL
Sbjct: 309 AKRLTSELTLETSDIEEKSVIIGERNRAATEALRRAIEQGHKRIGILYGGGHMPDLGRRL 368

Query: 351 REELNMVPADVQWVTAWSIRS-RELDRESLPFLKTMAEVSGWPLNRYETLALLIFSSVLA 409
           REE ++VP++V+WVTAWSIR+  +L+  S P L+ MAE   WPLNRY+TLALLIFSSVLA
Sbjct: 369 REEFDLVPSEVRWVTAWSIRNPTDLETSSYPILRKMAEALRWPLNRYQTLALLIFSSVLA 428

Query: 410 VDLWFWELLVGTAVNWASLAGSWIEQF 436
           +DL FWEL  G+ ++WA+  G+ + QF
Sbjct: 429 LDLCFWELFFGSTIDWATQIGAELYQF 455



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,197,970
Number of extensions: 322686
Number of successful extensions: 684
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 680
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 338
Effective length of database: 8,310,137
Effective search space: 2808826306
Effective search space used: 2808826306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)