BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0386300 Os08g0386300|AK070379
(119 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G60660.1 | chr1:22342589-22342954 REVERSE LENGTH=122 129 2e-31
AT1G26340.1 | chr1:9113992-9114755 FORWARD LENGTH=136 77 1e-15
AT5G53560.1 | chr5:21759628-21760353 FORWARD LENGTH=135 68 8e-13
AT2G32720.1 | chr2:13877013-13878447 REVERSE LENGTH=135 68 1e-12
AT1G37130.1 | chr1:14158617-14161652 FORWARD LENGTH=918 67 2e-12
AT5G48810.1 | chr5:19789249-19790180 REVERSE LENGTH=141 66 5e-12
AT1G77760.1 | chr1:29236005-29239367 REVERSE LENGTH=918 65 1e-11
AT2G46650.1 | chr2:19151807-19152394 FORWARD LENGTH=133 63 4e-11
AT2G46210.1 | chr2:18977542-18978891 FORWARD LENGTH=450 59 5e-10
AT3G61580.1 | chr3:22786253-22787602 FORWARD LENGTH=450 55 1e-08
>AT1G60660.1 | chr1:22342589-22342954 REVERSE LENGTH=122
Length = 121
Score = 129 bits (325), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/92 (64%), Positives = 74/92 (80%), Gaps = 1/92 (1%)
Query: 26 NKGKAKEASSNAKSVTF-RSYTKEEISAHNTRTDCWVIIKDKVYDVTSYVEEHPGGDAIL 84
N+ K + +S + V +SY+K E++ HN R DCW+IIKDKVYD+TSYVEEHPGGDAIL
Sbjct: 29 NQEKKRSSSEPVEDVVRPKSYSKSEVAVHNKRNDCWIIIKDKVYDITSYVEEHPGGDAIL 88
Query: 85 NNAGGDSTEGFFGPQHGFRVFEIIEDFCIGEL 116
++AG DST+GFFGPQH RVF++IEDF IGEL
Sbjct: 89 DHAGDDSTDGFFGPQHATRVFDMIEDFYIGEL 120
>AT1G26340.1 | chr1:9113992-9114755 FORWARD LENGTH=136
Length = 135
Score = 77.4 bits (189), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 43 RSYTKEEISAHNTRTDCWVIIKDKVYDVTSYVEEHPGG-DAILNNAGGDSTEGFFGPQHG 101
+ Y+ EE + HN + DCWV+I KVYDV+SY++EHPGG D +L AG D+T+ F H
Sbjct: 6 KLYSMEEAATHNKQDDCWVVIDGKVYDVSSYMDEHPGGDDVLLAVAGKDATDDFEDAGHS 65
Query: 102 FRVFEIIEDFCIGELKHS 119
E++E + IGEL S
Sbjct: 66 KDARELMEKYFIGELDES 83
>AT5G53560.1 | chr5:21759628-21760353 FORWARD LENGTH=135
Length = 134
Score = 68.2 bits (165), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
Query: 34 SSNAKSVTFRSYTKEEISAHNTRTDCWVIIKDKVYDVTSYVEEHPGGD-AILNNAGGDST 92
SS+ K ++F EE+S HN DCW+II KVYDVT ++++HPGGD +L++ G D+T
Sbjct: 2 SSDRKVLSF-----EEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDAT 56
Query: 93 EGFFGPQHGFRVFEIIEDFCIGELKHS 119
F H ++++ + IGE+ S
Sbjct: 57 NDFEDVGHSDTARDMMDKYFIGEIDSS 83
>AT2G32720.1 | chr2:13877013-13878447 REVERSE LENGTH=135
Length = 134
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 43 RSYTKEEISAHNTRTDCWVIIKDKVYDVTSYVEEHPGG-DAILNNAGGDSTEGFFGPQHG 101
+ +T E+S HN DCW++I KVY+VT ++E+HPGG D +L++ G D+T+ F H
Sbjct: 6 KIFTLSEVSEHNQAHDCWIVINGKVYNVTKFLEDHPGGDDVLLSSTGKDATDDFEDVGHS 65
Query: 102 FRVFEIIEDFCIGEL 116
E++E + +GE+
Sbjct: 66 ESAREMMEQYYVGEI 80
>AT1G37130.1 | chr1:14158617-14161652 FORWARD LENGTH=918
Length = 917
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 31 KEASSNAKSVTFRSYTKEEISAHNTRTDCWVIIKDKVYDVTSYVEEHPGG-DAILNNAGG 89
K S+ + T + Y+ E+ HN+ CW+I+ +YD T ++ +HPGG D+IL NAG
Sbjct: 531 KSVSTPFMNTTAKMYSMSEVKKHNSADSCWIIVHGHIYDCTRFLMDHPGGSDSILINAGT 590
Query: 90 DSTEGFFGPQHGFRVFEIIEDFCIGEL 116
D TE F H + +++ED+ IGEL
Sbjct: 591 DCTEEFEA-IHSDKAKKMLEDYRIGEL 616
>AT5G48810.1 | chr5:19789249-19790180 REVERSE LENGTH=141
Length = 140
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 43 RSYTKEEISAHNTRTDCWVIIKDKVYDVTSYVEEHPGGD-AILNNAGGDSTEGFFGPQHG 101
+ +T E+S H++ DCW++I KVYDVT ++++HPGGD IL + G D+T+ F H
Sbjct: 6 KVFTLSEVSQHSSAKDCWIVIDGKVYDVTKFLDDHPGGDEVILTSTGKDATDDFEDVGHS 65
Query: 102 FRVFEIIEDFCIGEL 116
+++++ +G++
Sbjct: 66 STAKAMLDEYYVGDI 80
>AT1G77760.1 | chr1:29236005-29239367 REVERSE LENGTH=918
Length = 917
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 26 NKGKAKEASSNAKSVTFRSYTKEEISAHNTRTDCWVIIKDKVYDVTSYVEEHPGG-DAIL 84
N K SS + + Y+ E+ HNT W+I+ +YD T ++++HPGG D+IL
Sbjct: 529 NNTLKKSVSSPFMNTASKMYSISEVRKHNTADSAWIIVHGHIYDCTRFLKDHPGGTDSIL 588
Query: 85 NNAGGDSTEGFFGPQHGFRVFEIIEDFCIGEL 116
NAG D TE F H + +++ED+ IGEL
Sbjct: 589 INAGTDCTEEFEA-IHSDKAKKLLEDYRIGEL 619
>AT2G46650.1 | chr2:19151807-19152394 FORWARD LENGTH=133
Length = 132
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 49 EISAHNTRTDCWVIIKDKVYDVTSYVEEHPGGD-AILNNAGGDSTEGFFGPQHGFRVFEI 107
+++ H + DCW++I KVYD++++++EHPGGD +L G D++ F H E+
Sbjct: 9 DVAKHKCKNDCWILIHGKVYDISTFMDEHPGGDNVLLAVTGKDASIDFEDVNHSKDAKEL 68
Query: 108 IEDFCIGELKHS 119
++ +CIG++ S
Sbjct: 69 MKKYCIGDVDQS 80
>AT2G46210.1 | chr2:18977542-18978891 FORWARD LENGTH=450
Length = 449
Score = 58.9 bits (141), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 43 RSYTKEEISAHNTRTDCWVIIKDKVYDVTSYVEEHPGGD-AILNNAGGDSTEGFFGPQHG 101
R T E++ HN D W+ I+ KVYDV+ +V+ HPGG+ AILN AG D T+ F G
Sbjct: 8 RYVTSEDLKKHNKPGDLWISIQGKVYDVSDWVKSHPGGEAAILNLAGQDVTDAFIAYHPG 67
>AT3G61580.1 | chr3:22786253-22787602 FORWARD LENGTH=450
Length = 449
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
Query: 46 TKEEISAHNTRTDCWVIIKDKVYDVTSYVEEHPGGDA-ILNNAGGDSTEGF--FGP---- 98
T E++ HN D W+ I+ KVY+V+ +++ HPGGD ILN G D T+ F F P
Sbjct: 11 TNEDLKKHNKSGDLWIAIQGKVYNVSDWIKTHPGGDTVILNLVGQDVTDAFIAFHPGTAW 70
Query: 99 ---QHGFRVFEIIEDFCIGEL 116
H F + I DF + E+
Sbjct: 71 HHLDHLFTGYH-IRDFQVSEV 90
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.132 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,313,460
Number of extensions: 91527
Number of successful extensions: 157
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 10
Length of query: 119
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 34
Effective length of database: 8,776,209
Effective search space: 298391106
Effective search space used: 298391106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 105 (45.1 bits)