BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0378800 Os08g0378800|AK069952
         (235 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11890.2  | chr3:3756026-3757609 FORWARD LENGTH=528             75   3e-14

>AT3G11890.2 | chr3:3756026-3757609 FORWARD LENGTH=528
          Length = 527

 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 152 NRIMRARLLERRVAGFGGLKNWLFTCGFGW-FVDILDSEKLGMYQIVSLTMNQLKDMGLD 210
           N  +R   LE++V   GGL  W+ + G G  F  +L  +++  +Q+ +LTM +LK MG  
Sbjct: 442 NEKLRVLNLEKKVEKAGGLNEWVGSIGLGREFERMLRGQRMSKFQMANLTMEKLKQMGAL 501

Query: 211 AVGPRRKLIHAIECVSQPN 229
           AVGPRRKLIHAI CV  P+
Sbjct: 502 AVGPRRKLIHAIGCVYHPH 520



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,756,089
Number of extensions: 169736
Number of successful extensions: 463
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 140
Effective length of database: 8,502,049
Effective search space: 1190286860
Effective search space used: 1190286860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)