BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0378000 Os08g0378000|AK067174
(370 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21250.1 | chr1:7439512-7441892 FORWARD LENGTH=736 74 1e-13
AT1G21270.1 | chr1:7444997-7447345 FORWARD LENGTH=733 74 1e-13
AT1G21230.1 | chr1:7429980-7432346 FORWARD LENGTH=734 72 4e-13
AT1G21240.1 | chr1:7434303-7436702 FORWARD LENGTH=742 67 1e-11
AT1G16130.1 | chr1:5525634-5528047 FORWARD LENGTH=749 59 5e-09
AT1G21210.1 | chr1:7424653-7427041 FORWARD LENGTH=739 55 6e-08
AT1G79680.1 | chr1:29980188-29982749 REVERSE LENGTH=770 54 1e-07
AT1G16260.1 | chr1:5559708-5562018 REVERSE LENGTH=721 50 2e-06
AT1G16110.1 | chr1:5518381-5520470 FORWARD LENGTH=643 50 3e-06
>AT1G21250.1 | chr1:7439512-7441892 FORWARD LENGTH=736
Length = 735
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 122/304 (40%), Gaps = 80/304 (26%)
Query: 33 CTRSCGNISVPYPFGVEADCYYPG---FNLTCNHSYHPPTLFLVDGAGTSHQVLDISISN 89
C CGNI++ YPFG+ + CYYPG F++TC H + DI ++N
Sbjct: 32 CQNKCGNITIEYPFGISSGCYYPGNESFSITCKEDR-------------PHVLSDIEVAN 78
Query: 90 STVRINSSLIAFTKSADKQAVIN---TTWEVRGPYYLLD----------DPSNMVVLVGC 136
F S Q ++N T ++ +G D +N + VGC
Sbjct: 79 -----------FNHSGQLQVLLNRSSTCYDEQGKKTEEDSSFTLENLSLSANNKLTAVGC 127
Query: 137 QA--RFDVRGGSNNTLISSCTVVCPSPDPSTTYIGAGDGSCSGVGCCQANIVLRYSRYTV 194
A D G N + ++C +C SP + DG C+G GCC+ ++ YT
Sbjct: 128 NALSLLDTFGMQNYS--TACLSLCDSPPEA-------DGECNGRGCCRVDVSAPLDSYTF 178
Query: 195 QIHDLQEQDAPSSSPTFNDGS----AYIV-DQPFNY--TGLMIFEKNFPQALPAMLDWFI 247
+ + + S F+D S A++V D FN+ T ++ +N + P +LDW +
Sbjct: 179 ETTSGRIKHMTS----FHDFSPCTYAFLVEDDKFNFSSTEDLLNLRNVMR-FPVLLDWSV 233
Query: 248 VGDNSTCPMSTNXXXXXXXXXXXCRSVHSFYEXXXXXXXXXXXXXXRCRCSPGYQGNPYV 307
N TC + + + Y CRC+ G+ GNPY+
Sbjct: 234 --GNQTCEQVGSTSICGGNSTCLDSTPRNGY---------------ICRCNEGFDGNPYL 276
Query: 308 KDGC 311
GC
Sbjct: 277 SAGC 280
>AT1G21270.1 | chr1:7444997-7447345 FORWARD LENGTH=733
Length = 732
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 120/303 (39%), Gaps = 79/303 (26%)
Query: 33 CTRSCGNISVPYPFGVEADCYYPG---FNLTCNHSYHPPTLFLVDGAGTSHQVLDISISN 89
C CGN++V YPFG CYYPG FNLTCN LF + V+++S+S
Sbjct: 29 CQTRCGNVAVEYPFGTSPGCYYPGDESFNLTCNEQ---EKLFF-----GNMPVINMSLSG 80
Query: 90 S-TVRINSSLIAFTKSADKQAVINTTWEVRGPYYLLDDPSNMVVLVGCQARFDVRGGSNN 148
VR+ S + + S KQ G + L + N +VGC + +R
Sbjct: 81 QLRVRLVRSRVCY-DSQGKQTDYIAQRTTLGNFTLSE--LNRFTVVGCNSYAFLRTSGVE 137
Query: 149 TLISSCTVVCPSPDPSTTYIGAGDGSCSGVGCCQANIVLRYSRYTVQIHDLQEQDAPSSS 208
+ C +C D +TT +GSCSG GCCQ + YS V+ H
Sbjct: 138 KYSTGCISIC---DSATTK----NGSCSGEGCCQIPVPRGYSFVRVKPHSFHNH------ 184
Query: 209 PT---FNDGS-AYIV-DQPFNYTGLMIFE--KNFPQALPAMLDWFI-------------V 248
PT FN + A++V D F++ L +N P +LDW I
Sbjct: 185 PTVHLFNPCTYAFLVEDGMFDFHALEDLNNLRNVT-TFPVVLDWSIGDKTCKQVEYRGVC 243
Query: 249 GDNSTCPMSTNXXXXXXXXXXXCRSVHSFYEXXXXXXXXXXXXXXRCRCSPGYQGNPYVK 308
G NSTC ST C+C G++GNPY+
Sbjct: 244 GGNSTCFDSTG------------------------------GTGYNCKCLEGFEGNPYLP 273
Query: 309 DGC 311
+GC
Sbjct: 274 NGC 276
>AT1G21230.1 | chr1:7429980-7432346 FORWARD LENGTH=734
Length = 733
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 121/290 (41%), Gaps = 52/290 (17%)
Query: 33 CTRSCGNISVPYPFGVEADCYYPG---FNLTCNHSYHPPTLFLVDGAGTSHQVLDISISN 89
C CG++ + YPFG+ CYYPG FN+TC P L ++ +VL+ N
Sbjct: 29 CQTRCGDVPIDYPFGISTGCYYPGDDSFNITCEED-KPNVL-------SNIEVLNF---N 77
Query: 90 STVRINSSLIAFTKSADKQAVINTTWEVRGPYYLLDD----PSNMVVLVGCQARFDVRGG 145
+ ++ + T D+Q T + ++ LD+ P+N LVGC A +
Sbjct: 78 HSGQLRGLIPRSTVCYDQQ----TNNDFESLWFRLDNLSFSPNNKFTLVGCNAWALLSTF 133
Query: 146 SNNTLISSCTVVCPSPDPSTTYIGAGDGSCSGVGCCQANIVLRYSRYTVQIHDLQEQDAP 205
+ C +C +P P + C+GVGCC+ + + + ++ + ++
Sbjct: 134 GIQNYSTGCMSLCDTPPPPNS-------KCNGVGCCRTEVSIPLDSHRIETQPSRFENM- 185
Query: 206 SSSPTFNDGSA--YIVDQPFNYTGLMIFE--KNFPQALPAMLDWFIVGDNSTCPMSTNXX 261
+S FN S ++ D FN++ L + +N + P +LDW I N TC
Sbjct: 186 TSVEHFNPCSYAFFVEDGMFNFSSLEDLKDLRNVTR-FPVLLDWSI--GNQTCEQVVG-- 240
Query: 262 XXXXXXXXXCRSVHSFYEXXXXXXXXXXXXXXRCRCSPGYQGNPYVKDGC 311
C + ++ C+C G+ GNPY+ DGC
Sbjct: 241 ------RNICGGNSTCFD-------STRGKGYNCKCLQGFDGNPYLSDGC 277
>AT1G21240.1 | chr1:7434303-7436702 FORWARD LENGTH=742
Length = 741
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 116/298 (38%), Gaps = 56/298 (18%)
Query: 33 CTRSCGNISVPYPFGVEADCYYPG---FNLTCNHSYHPPTLFLVDGAGTSHQVLDISISN 89
C CGN+++ YPFG+ CYYPG FNLTC ++ QV +IS S
Sbjct: 31 CKLKCGNVTIEYPFGISTGCYYPGDDNFNLTCVVEEKLLLFGII-------QVTNISHSG 83
Query: 90 STVRINSSLIAFTKSADKQAVINTT---WEVRGPYYLLDDPSNMVVLVGCQARFDVRGGS 146
++ F++ +++ N T +++ + L +N LVGC A +
Sbjct: 84 ---HVSVLFERFSECYEQKNETNGTALGYQLGSSFSL--SSNNKFTLVGCNALSLLSTFG 138
Query: 147 NNTLISSCTVVCPSPDPSTTYIGAGDGSCSGVGCCQA-NIVLRYSRYTVQIHDLQEQDAP 205
+ C +C S + +G C+GVGCC + + + T Q ++ ++
Sbjct: 139 KQNYSTGCLSLCNSQPEA-------NGRCNGVGCCTTEDFSVPFDSDTFQFGSVRLRNQV 191
Query: 206 SSSPTFNDGSAY----------IVDQPFNYTGLMIFEKNFPQA--LPAMLDWFIVGDNST 253
++S + S Y + D FN+ KN P LDW I N T
Sbjct: 192 NNSLDLFNTSVYQFNPCTYAFLVEDGKFNFDSSKDL-KNLRNVTRFPVALDWSI--GNQT 248
Query: 254 CPMSTNXXXXXXXXXXXCRSVHSFYEXXXXXXXXXXXXXXRCRCSPGYQGNPYVKDGC 311
C + + C S Y C+C+ GY GNPY +GC
Sbjct: 249 CEQAGS--------TRICGKNSSCYNSTTRNGYI-------CKCNEGYDGNPYRSEGC 291
>AT1G16130.1 | chr1:5525634-5528047 FORWARD LENGTH=749
Length = 748
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 124/293 (42%), Gaps = 39/293 (13%)
Query: 33 CTRSCGNISVPYPFGVEA-DCYY-PGFNLTCNHSYHPPTLFLVDGAGTSHQVLDISISNS 90
C R CG IS+P+PFG+ DCY P + + CN + P L ++ ++++IS+ N
Sbjct: 35 CNRVCGEISIPFPFGIGGKDCYLNPWYEVVCNSTNSVPFLSRIN-----RELVNISL-NG 88
Query: 91 TVRINSSLIAFT-KSADKQAVINTTWEVRG---PYYLLDDPSNMVVLVGCQARFDVRGGS 146
V I + + + + Q + V G PY+L D N++V VGC+ + + G +
Sbjct: 89 VVHIKAPVTSSGCSTGTSQPLTPPPLNVAGQGSPYFLTD--KNLLVAVGCKFKAVMAGIT 146
Query: 147 NNTLISSCTVVCPSPDPSTTYIGAGDGSCSGVGCCQANIVLRYSRY-TVQIHDLQEQDAP 205
+ I+SC C + S+ + C+G CCQ I + +V I + P
Sbjct: 147 SQ--ITSCESSCNERNSSSQE--GRNKICNGYKCCQTRIPEGQPQVISVDI------EIP 196
Query: 206 SSSPTFNDGS---AYIVDQPFNYTGLMIFEKNFPQALPAM-LDWFIVGDNS--TCPMSTN 259
+ T +G A++ ++ + EK A+ L WF +S T P+S
Sbjct: 197 QGNNTTGEGGCRVAFLTSDKYSSLNVTEPEKFHGHGYAAVELGWFFDTSDSRDTQPISCK 256
Query: 260 XXXXXXXXXXXCRSVHSFYEXXXXXXXXXXXXXXRCRC-SPGYQGNPYVKDGC 311
R S+ C C SPGY+GNP++ GC
Sbjct: 257 NASDTTPYTSDTRCSCSY-------GYFSGFSYRDCYCNSPGYKGNPFLPGGC 302
>AT1G21210.1 | chr1:7424653-7427041 FORWARD LENGTH=739
Length = 738
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 120/290 (41%), Gaps = 51/290 (17%)
Query: 33 CTRSCGNISVPYPFGVEADCYY---PGFNLTCNHSYHPPTLFLVDGAGTSHQVLDISISN 89
C CGN+++ YPFG C+ P FNL+C + LF +V++IS S
Sbjct: 28 CPEKCGNVTLEYPFGFSPGCWRAEDPSFNLSCVNE----NLFY-----KGLEVVEISHS- 77
Query: 90 STVRI--NSSLIAFTKSADKQAVINTTWEVRGPYYLLDDPSNMVVLVGCQARFDVRGGSN 147
S +R+ +S I + S K A W G L +N + +GC + V SN
Sbjct: 78 SQLRVLYPASYICYN-SKGKFAKGTYYWSNLGNLTL--SGNNTITALGCNSYAFV--SSN 132
Query: 148 NTLISSCTVVCPSPDPSTTYIGAGDGSCSGVGCCQANIVLRYSRYTVQIHDLQEQDAPSS 207
T +S V C S + ++ +G C+G GCCQ + + V+ + D +S
Sbjct: 133 GTRRNS--VGCISACDALSH--EANGECNGEGCCQNPVPAGNNWLIVRSYRF---DNDTS 185
Query: 208 SPTFNDGS---AYIVDQ---PFNYTGLMIFEKNFPQALPAMLDWFIVGDNSTCPMSTNXX 261
++G A++V+ +N + + +N P +LDW I G+ TC
Sbjct: 186 VQPISEGQCIYAFLVENGKFKYNASDKYSYLQNRNVGFPVVLDWSIRGE--TCGQVGEKK 243
Query: 262 XXXXXXXXXCRSVHSFYEXXXXXXXXXXXXXXRCRCSPGYQGNPYVKDGC 311
S + C+C G+QGNPY+++GC
Sbjct: 244 CGVNGICSNSASGIGY----------------TCKCKGGFQGNPYLQNGC 277
>AT1G79680.1 | chr1:29980188-29982749 REVERSE LENGTH=770
Length = 769
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 127/336 (37%), Gaps = 98/336 (29%)
Query: 33 CTRSCGNISVPYPFGVEADCYYPG-FNLTC-NHSYHPPTLFLVDGAGTSHQVLDISISN- 89
C ++CG I +PYPFG+ CY + + C N+S P L +++ +V+ IS S+
Sbjct: 27 CPKTCGGIDIPYPFGIGTGCYLEKWYEIICVNNSV--PFLSIIN-----REVVSISFSDM 79
Query: 90 ---------STVRINSSLIAFTKSADKQAVINTTWEVRGPYYLLDDPSNMVVLVGCQARF 140
++RI + + + S+ Q + P+YL D+ NM++ VGC
Sbjct: 80 YRRFFNVGYGSIRIRNPIASKGCSSGGQEFGSLLNMTGYPFYLGDN--NMLIAVGC---- 133
Query: 141 DVRGGSNNTL--------ISSCTVVCPSPD--PSTTYIGA-------------------G 171
NNT I C C + P Y+G
Sbjct: 134 ------NNTASLTNVEPSIVGCESTCSTNQDIPINDYLGVLYCNARYGDSEYCKNISIMN 187
Query: 172 DGSCSGVGCCQANIVLRYSRYTVQIHDLQEQDAPSSSPTFNDGSAYIVDQPFNYTGLMIF 231
D SC+G+GCC+A++ RY QI ++ D+ + S A+I D+ + +
Sbjct: 188 DTSCNGIGCCKASLPARYQ----QIIGVEIDDSNTESKGCK--VAFITDEEY-----FLS 236
Query: 232 EKNFPQALPAM------LDWFIVGDNSTCPMSTNXXXXXXXXXXXCRSVHSFYEXXXXXX 285
+ P+ L A L WFI N + S C+S+ +
Sbjct: 237 NGSDPERLHANGYDTVDLRWFIHTANHSFIGSLG-----------CKSIDEYTILRRDNR 285
Query: 286 X----------XXXXXXXRCRCSPGYQGNPYVKDGC 311
C C+ G++GNPY+ C
Sbjct: 286 EYGIGCLCDYNSTTTGYATCSCASGFEGNPYIPGEC 321
>AT1G16260.1 | chr1:5559708-5562018 REVERSE LENGTH=721
Length = 720
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 111/293 (37%), Gaps = 57/293 (19%)
Query: 33 CTRSCGNISVPYPFGVEADCYY-PGFNLTCNHSY-HPPTLFL--VDGAGTSHQVLD-ISI 87
C+ CGN+SVPYPFG+ CY F + C S P L L + A TS + D SI
Sbjct: 33 CSDHCGNVSVPYPFGIGKGCYKNKWFEIVCKSSSDQQPILLLPRIRRAVTSFNLGDPFSI 92
Query: 88 SNSTVRINSSLIAFTKSADKQAVINTTWEVRG-PYYLLDDPSNMVVLVGC--QARFDVRG 144
S S + + ++ +++ ++G P+++ ++ N VGC +A +V G
Sbjct: 93 SVYNKFYIQSPLKHSGCPNRDGYSSSSLNLKGSPFFISEN--NKFTAVGCNNKAFMNVTG 150
Query: 145 GSNNTLISSCTVVCPSPDPSTTYIGAGDGSCSGVGCCQANI--VLRYSRYTVQIHDLQEQ 202
I C C + S Y GA + SC G CCQ I +L+ + + L+
Sbjct: 151 ----LQIVGCETTCGNEIRS--YKGA-NTSCVGYKCCQMTIPPLLQLQVFDATVEKLEPN 203
Query: 203 DAPSSSPTFND----GSAYIVDQPFNYTGLMIFEKNFPQALPAMLDWFIVGDNSTCPMST 258
GS + + Y+ E + L M ++ +T
Sbjct: 204 KQGCQVAFLTQFTLSGSLFTPPELMEYSEYTTIELEWRLDLSYMTSKRVLCKGNT----- 258
Query: 259 NXXXXXXXXXXXCRSVHSFYEXXXXXXXXXXXXXXRCRCSPGYQGNPYVKDGC 311
F+E +C C GY+GNPY+ GC
Sbjct: 259 ------------------FFE-----------DSYQCSCHNGYEGNPYIPGGC 282
>AT1G16110.1 | chr1:5518381-5520470 FORWARD LENGTH=643
Length = 642
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 116/299 (38%), Gaps = 40/299 (13%)
Query: 33 CTRSCGNISVPYPFGVEADCYYPG-FNLTCNHSYHPPTLFLVD-GAGTSHQVLDISISN- 89
C R+CG +S+P+PFG+ DCY G + + CN S + V + + +V++IS+ +
Sbjct: 42 CNRACGGVSIPFPFGIGKDCYLNGWYEVICNTSTSGSSGTTVPFLSRINSEVVNISLPDG 101
Query: 90 ----STVRINSSLIAFTKSADKQAVI-------NTTWEVRG-PYYLLDDPSNMVVLVGCQ 137
V I + + S+ + N RG PY+L D+ N +V+VGC
Sbjct: 102 KKLYGVVHIKGPVTSLGCSSSSSSSQVSEMSLPNLNVTGRGSPYFLTDE--NCLVMVGCG 159
Query: 138 ARFDVRGGSNNTLISSCTVVCPSPDPSTTYIGAGDGSCSGVGCCQANIVLRYSRYTVQIH 197
+ ++ + L C C S + C G CCQA I L Q+
Sbjct: 160 TKALMKDIESEIL--GCESSCEDSKSSEEVT---NSKCDGYKCCQARIPLERP----QVI 210
Query: 198 DLQEQDAPSSSPTFNDGSAYIVDQ---PFNYTGLMIFEKNFPQALPAMLDWFIVGDNS-- 252
+ ++ ++ A++ ++ P N T F + L W+ +S
Sbjct: 211 GINIENTSATRGKEGCSVAFLTNKRYAPMNVTEPEQFHAGGYAVVE--LGWYFDTSDSRY 268
Query: 253 TCPMSTNXXXXXXXXXXXCRSVHSFYEXXXXXXXXXXXXXXRCRCSPGYQGNPYVKDGC 311
P+ S SF + C C+ GY GNPY++ GC
Sbjct: 269 RNPLGCRNMTRYS-------SYSSFDKCSCEYDYFSGMSYRICYCNYGYTGNPYLRHGC 320
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,900,337
Number of extensions: 332055
Number of successful extensions: 609
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 604
Number of HSP's successfully gapped: 10
Length of query: 370
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 270
Effective length of database: 8,364,969
Effective search space: 2258541630
Effective search space used: 2258541630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)