BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0375900 Os08g0375900|AK069663
         (250 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28960.1  | chr1:10110135-10111607 REVERSE LENGTH=294          246   1e-65
AT2G33980.1  | chr2:14356786-14359840 REVERSE LENGTH=303          219   1e-57
AT5G45940.1  | chr5:18629665-18630597 REVERSE LENGTH=223          179   9e-46

>AT1G28960.1 | chr1:10110135-10111607 REVERSE LENGTH=294
          Length = 293

 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 144/197 (73%)

Query: 54  FRPRRAAVLICLFRGAAGELRVLLTKRSSKLSSHSGEVSLPXXXXXXXXXXXXXXXLREA 113
           F+P+RAAVLICLF G  G+LRV+LTKRSSKLS+HSGEVSLP                REA
Sbjct: 97  FKPKRAAVLICLFEGDDGDLRVILTKRSSKLSTHSGEVSLPGGKAEEDDKDDGMTATREA 156

Query: 114 KEEIGLDPASVTVVASLEHFLSKHLLVVVPVVGILSDIQAFKPVLNVDEVDSIFDVPLEM 173
           +EEIGLDP+ V VV SLE FLSKHLL V+PV+GIL D   F P+ N  EV+++FD PLEM
Sbjct: 157 EEEIGLDPSLVDVVTSLEPFLSKHLLRVIPVIGILRDKNKFNPIPNPGEVEAVFDAPLEM 216

Query: 174 FLKDEKRTSEEREWMGQEFTIHYFNYEKGSEKYVIWGLTAGILIHAASVVFQRPPDFPAR 233
           FLKDE R SEEREWMG+++ IHYF+Y  G + Y+IWGLTAGILI AASV ++RPP F  +
Sbjct: 217 FLKDENRRSEEREWMGEKYLIHYFDYRTGDKDYMIWGLTAGILIRAASVTYERPPAFIEQ 276

Query: 234 TVQFNLPKYSKECSSMP 250
             +F  PK  ++ + MP
Sbjct: 277 CPKFKYPKMVEKHTCMP 293



>AT2G33980.1 | chr2:14356786-14359840 REVERSE LENGTH=303
          Length = 302

 Score =  219 bits (557), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/191 (58%), Positives = 135/191 (70%), Gaps = 3/191 (1%)

Query: 54  FRPRRAAVLICLFRGAAGELRVLLTKRSSKLSSHSGEVSLPXXXXXXXXXXXXXXXLREA 113
           FRP++AAVLICLF G  G+LRV+LTKRSS LS+HSGEVSLP                REA
Sbjct: 71  FRPKKAAVLICLFEGDDGDLRVILTKRSSTLSTHSGEVSLPGGKAEEHDKDDGITATREA 130

Query: 114 KEEIGLDPASVTVVASLEHFLSKHLLVVVPVVGILSDIQAFKPVLNVDEVDSIFDVPLEM 173
           +EEIGLDP+ V VVA LE FLS+HLL V+PVVGIL D +AF P  N  EV+++ D P EM
Sbjct: 131 EEEIGLDPSLVDVVAFLEPFLSQHLLRVIPVVGILWDRKAFNPTPNPAEVEAVLDAPFEM 190

Query: 174 FLKDEKRTSEEREWMGQEFTIHYFNYEKGSEKYVIWGLTAGILIHAASVVFQRPPDFPAR 233
           FLKDE R SEE +WMG++  +H+F+Y+ G   YVIWGLTA ILI AA+VV+QRPP F  +
Sbjct: 191 FLKDENRRSEEFDWMGEKHLVHFFDYKTGDSDYVIWGLTARILIRAATVVYQRPPAFIEQ 250

Query: 234 TVQFNLPKYSK 244
                  KYSK
Sbjct: 251 KPNL---KYSK 258



>AT5G45940.1 | chr5:18629665-18630597 REVERSE LENGTH=223
          Length = 222

 Score =  179 bits (455), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 96/194 (49%), Positives = 125/194 (64%), Gaps = 6/194 (3%)

Query: 54  FRPRRAAVLICLF---RGAAGELRVLLTKRSSKLSSHSGEVSLPXXXXXXXXXXXXXXXL 110
           F  + +AVL+CL+   R    ELRV+LTKRS+ LSSH GEV+LP               L
Sbjct: 29  FPAKSSAVLVCLYQEQREDKNELRVILTKRSTTLSSHPGEVALPGGKRDQEDKDDIATAL 88

Query: 111 REAKEEIGLDPASVTVVASLEHFLSKHLLVVVPVVGILSDIQAFKPVLNVDEVDSIFDVP 170
           REA+EEIGLDP+ VT+++ LE F++K  + V PV+G L D +AFK + N  EV+ IFDVP
Sbjct: 89  REAREEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKKAFKQLPNPAEVEEIFDVP 148

Query: 171 LEMFLKDEKRTSEEREWMGQEFTIHYFNY--EKGSEKYVIWGLTAGILIHAASVVFQRPP 228
           LEMFLKD  R +EERE  G+ + + YF+Y  E     ++IW LTAGILI  AS+V+QR P
Sbjct: 149 LEMFLKDRNRRAEEREHEGERYLLQYFDYYSEDKERSFIIWALTAGILIRVASIVYQRLP 208

Query: 229 DFPARTVQF-NLPK 241
           +F  R   F N P 
Sbjct: 209 EFQERKPSFWNQPN 222



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,401,867
Number of extensions: 153187
Number of successful extensions: 346
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 3
Length of query: 250
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 154
Effective length of database: 8,474,633
Effective search space: 1305093482
Effective search space used: 1305093482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)