BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0369400 Os08g0369400|J065116P10
         (201 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04140.1  | chr3:1087063-1089106 FORWARD LENGTH=657            117   6e-27
AT3G01750.1  | chr3:270615-272691 FORWARD LENGTH=665              110   5e-25

>AT3G04140.1 | chr3:1087063-1089106 FORWARD LENGTH=657
          Length = 656

 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 69/83 (83%), Gaps = 3/83 (3%)

Query: 94  LLECECKNSAAAENTLLRAGYGGWLLYSAASAGDMAFVQELMDRDPLLVFGEGEHGVMDM 153
           L ECE  N    +N+L+RAGYGGWLLY+AASAGD+ FV++L++RDPLLVFGEGE+GV D+
Sbjct: 84  LEECEIGN---GDNSLIRAGYGGWLLYTAASAGDLEFVKKLLERDPLLVFGEGEYGVTDI 140

Query: 154 FYAAARGGNAEVFKLLLDHAMSP 176
            YAAARG + +VF+LLLD A+ P
Sbjct: 141 LYAAARGRSDDVFRLLLDFALLP 163



>AT3G01750.1 | chr3:270615-272691 FORWARD LENGTH=665
          Length = 664

 Score =  110 bits (275), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/83 (59%), Positives = 67/83 (80%)

Query: 98  ECKNSAAAENTLLRAGYGGWLLYSAASAGDMAFVQELMDRDPLLVFGEGEHGVMDMFYAA 157
           E  +  +  NTL+R+GYGGWL+Y+AASAGD+AFV +L++R+PLLVFGEGE+GV D+ YAA
Sbjct: 88  EGGSPGSKRNTLIRSGYGGWLIYTAASAGDLAFVHDLLERNPLLVFGEGEYGVTDILYAA 147

Query: 158 ARGGNAEVFKLLLDHAMSPRCST 180
           AR  N +VF+L+ D A++PR  T
Sbjct: 148 ARSKNDDVFRLIYDFAVTPRFGT 170



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,307,687
Number of extensions: 163758
Number of successful extensions: 380
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 2
Length of query: 201
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 107
Effective length of database: 8,529,465
Effective search space: 912652755
Effective search space used: 912652755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)