BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0361000 Os08g0361000|AK070805
         (325 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G43240.1  | chr3:15210032-15214440 REVERSE LENGTH=748          241   3e-64

>AT3G43240.1 | chr3:15210032-15214440 REVERSE LENGTH=748
          Length = 747

 Score =  241 bits (616), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 144/318 (45%), Positives = 182/318 (57%), Gaps = 13/318 (4%)

Query: 1   GISYIMYWRYSLSSYAASHFRHSLMSVVQSSCSHAWDAFQVAYATFQLYCVRNNEV---- 56
           G+ Y++YW+   S YAA HFRHSL SV+QSSCS  WD F VA A+F+LYC  +N V    
Sbjct: 134 GVQYVIYWKNVFSKYAACHFRHSLFSVIQSSCSDTWDVFHVAEASFRLYCTSDNAVLPSN 193

Query: 57  -QRLM---LGPHLLGDAPRIYITPPGNEIAEEEDTSEYFPDIKIYDEDVNLKLLICGAHC 112
             R M   +GP LLG+ P+I +  P  +  EEE++ E  P IKIYDEDV ++ L+CG  C
Sbjct: 194 SNRKMNYEMGPCLLGEPPKIDVVSPEADELEEENSLESLPSIKIYDEDVTVRFLLCGPPC 253

Query: 113 TLDSSLLNSLEDGLNALLNIEFRWCKLQDRVSA-APPLHVDSTLLDGMVTICCDIXXXXX 171
           T+D+ LL SL DGLNALL IE R  KL +R SA APPL    T   G+VT+ CD+     
Sbjct: 254 TVDTFLLGSLMDGLNALLRIEMRGSKLHNRSSAPAPPLQA-GTFTRGVVTMRCDVSTCSS 312

Query: 172 XXXXXXXXXXPQTCFDDXXXXXXXXXXXXXSRQLVR-VVSVSEDGPSSAEPLTSMSVASG 230
                      QTCF D               QLV  VV+  E     +EP  S S+A G
Sbjct: 313 AHISMLVSGNAQTCFSDQLLENHIKHEVVEKIQLVHSVVNSEETKRGFSEPRRSASIACG 372

Query: 231 ASTFEVLMTLPKWAAQVLKYLAQETSYKSLVPLGIASVNGTPVCSFDSQDVDWLLFF--R 288
           AS  EV M +P WA QVL+ LA + SY+SLV LG+AS+ G  V SF+  D + LLFF  +
Sbjct: 373 ASVCEVSMQVPTWALQVLRQLAPDVSYRSLVVLGVASIQGLSVASFEKDDAERLLFFCGQ 432

Query: 289 TIQDEAIGTSLYPHPPRW 306
            I D +   +L    P W
Sbjct: 433 QINDTSNHDALLSKIPNW 450



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.133    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,506,220
Number of extensions: 246685
Number of successful extensions: 563
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,392,385
Effective search space: 1896679010
Effective search space used: 1896679010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)