BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0359300 Os08g0359300|AK099989
(527 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G15060.1 | chr1:5184053-5186856 REVERSE LENGTH=579 510 e-145
AT1G73750.1 | chr1:27736659-27738887 FORWARD LENGTH=453 401 e-112
>AT1G15060.1 | chr1:5184053-5186856 REVERSE LENGTH=579
Length = 578
Score = 510 bits (1314), Expect = e-145, Method: Compositional matrix adjust.
Identities = 262/514 (50%), Positives = 339/514 (65%), Gaps = 47/514 (9%)
Query: 60 VCTADELHHAPVSGAGWRLALWRYXXXXXXXXXXXXLMLLSGVGTNAIGFDLSPGASFAR 119
+CTADELH+ V WRLALWRY L+LLSGVGTNAIG+DLSPG SFAR
Sbjct: 63 LCTADELHYVSVPNTDWRLALWRYLPPPQAPTRNHPLLLLSGVGTNAIGYDLSPGCSFAR 122
Query: 120 HMSNQGFDTWIVEVRGSGLSIR-----DHDNSASSPSGAFDDISNGTLALDKSSTLEVAS 174
HMS QGF+TWI+EVRG+GLS R D + SA S + + + S + +
Sbjct: 123 HMSGQGFETWILEVRGAGLSTRVSDLKDVEESAHELSNQIESTARAAAGKETCSDEKQTT 182
Query: 175 VQSSGFSGIDYDDLGIV----ALDDPPLLMEMTS------------------------FF 206
+ D+ +V A D+ L+ +TS F
Sbjct: 183 DIMDSSAPAPASDVSVVGEASAWDESQLVARLTSTFMSLSERLSGFLSEGQSVFMSAKLF 242
Query: 207 DRISKLLEEASLNKNFHEITDKISVLSEMVESSAVIGPMREESLRLLKNFQEQ------- 259
D+I+ L+++ L + F++I K+ L E ++S ++ +R+ + RL+ F +
Sbjct: 243 DKIAMLVDDTQLYERFNDIRSKLLSLIESKQNSGLVNQVRDLAQRLVNLFDDGQRSVSPP 302
Query: 260 -IDSWEHFVAT------QMNLNSEYNWDFDHYLEEDIPTAVEYIRQHSRVKDGKLLAIGH 312
ID E AT Q++L +Y+WDFDHYLEED+P A+EY+R S+ KDGKL AIGH
Sbjct: 303 LIDLQERLTATIEDFQKQLDLIVKYDWDFDHYLEEDVPAAIEYVRAQSKPKDGKLFAIGH 362
Query: 313 SMGGILLYAMLSKYGFEGVPSNLAAIVTLASSVDYTTSNSSLKMLLPLVHPAQALNVPAV 372
SMGGILLYAMLS+ FEG ++AA+ TLASSVDYTTSNS+LK+L+PL +PA+AL+VP V
Sbjct: 363 SMGGILLYAMLSRCAFEGREPSVAAVATLASSVDYTTSNSALKLLIPLANPAEALSVPVV 422
Query: 373 PLGTLLAAAYPWASGPPYLFSWLNHQISAQDMMHPELLSKLVFNNFCTVPAKVVLQLTTA 432
PLG LLAAA+P ++ PPY+ SWLN IS+ DMMHPE+L KLV NNFCT+PAK+++QLTTA
Sbjct: 423 PLGALLAAAFPLSTRPPYVLSWLNDLISSTDMMHPEMLEKLVLNNFCTIPAKLLIQLTTA 482
Query: 433 FREGGLCNRTETFSYKDHLRYCQTPVLALAGDKDLICPPEAVYETVKLIPQHMVKYGVFG 492
FREGGL +R+ F YKDHL PVLALAGD+DLICPP AV +TVKL P+++V Y + G
Sbjct: 483 FREGGLRDRSGKFYYKDHLPRTSVPVLALAGDRDLICPPAAVEDTVKLFPENLVTYKLLG 542
Query: 493 KPEGPHYAHYDLVGGRLATDEVYPCIIEFLSHHD 526
+P+GPHYAHYDLVGGRLA ++VYPCI EFLSHHD
Sbjct: 543 EPDGPHYAHYDLVGGRLAVEQVYPCITEFLSHHD 576
>AT1G73750.1 | chr1:27736659-27738887 FORWARD LENGTH=453
Length = 452
Score = 401 bits (1031), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/468 (44%), Positives = 277/468 (59%), Gaps = 72/468 (15%)
Query: 60 VCTADELHHAPVSGAGWRLALWRYXXXXXXXXXXXXLMLLSGVGTNAIGFDLSPGASFAR 119
+CTADELH+ PV + WR+ALWRY L+LLSG+GTNA+ +DLSP SFAR
Sbjct: 56 ICTADELHYVPVPNSDWRVALWRYLPSPKAPKRNHPLLLLSGIGTNAVTYDLSPECSFAR 115
Query: 120 HMSNQGFDTWIVEVRGSGLSIRDHDNSASSPSGAFDDISNGTLALDKSSTLEVASVQSSG 179
MS GFDTWI+E+RG+GLS D + + +SN
Sbjct: 116 SMSGSGFDTWILELRGAGLSSLSVDTNLGKGNNQQRIVSN-------------------- 155
Query: 180 FSGIDYDDLGIVALDDPPLLMEMTSFFDRISKLLEEASLNKNFHEITDKISVLSEMVESS 239
LL S +R+ +L+ S
Sbjct: 156 ------------------LLENFISVSERLENVLDGG----------------------S 175
Query: 240 AVIGPMREESLRLLKNFQEQIDSWEHFVATQMNLNSEYNWDFDHYLEEDIPTAVEYIRQH 299
++G M++ + +F+++ + H+ NWDFD+YLEED+P+A++Y+R
Sbjct: 176 KILG-MQDRLSKRAGDFKQRFELIPHY-----------NWDFDNYLEEDVPSAMDYVRTQ 223
Query: 300 SRVKDGKLLAIGHSMGGILLYAMLSKYGFEGVPSNLAAIVTLASSVDYTTSNSSLKMLLP 359
++ KDGKLLA+GHSMGGILLYA+LS+ GF+G+ S LA + TLAS+ DY++S + LK LLP
Sbjct: 224 TKSKDGKLLAVGHSMGGILLYALLSRCGFKGMDSGLAGVTTLASTFDYSSSGTLLKYLLP 283
Query: 360 LVHPAQALNVPAVPLGTLLAAAYPWASGPPYLFSWLNHQISAQDMMHPELLSKLVFNNFC 419
+ PAQA+N+P +P+ T+LA A+P PPY SWL ISA MM PE++ KLV N+ C
Sbjct: 284 MKEPAQAINLPIMPIDTMLAMAHPLMCRPPYSLSWLTANISAPQMMDPEVIEKLVLNSLC 343
Query: 420 TVPAKVVLQLTTAFREGGLCNRTETFSYKDHLRYCQTPVLALAGDKDLICPPEAVYETVK 479
TVP K++LQLTTA GGL +RT TF YKDH+ P+LALAGD D+ICPP+AVY+TVK
Sbjct: 344 TVPVKLLLQLTTAVDHGGLRDRTGTFCYKDHISKTNVPILALAGDWDIICPPDAVYDTVK 403
Query: 480 LIPQHMVKYGVFGKPEGPHYAHYDLVGGRLATDEVYPCIIEFLSHHDQ 527
LIP+H+ Y V G P GPHY H DL+ GR A +EVYP I FL D+
Sbjct: 404 LIPEHLATYKVVGSPGGPHYGHQDLISGRTARNEVYPLITRFLQQQDE 451
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,056,344
Number of extensions: 454139
Number of successful extensions: 1158
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1158
Number of HSP's successfully gapped: 3
Length of query: 527
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 424
Effective length of database: 8,282,721
Effective search space: 3511873704
Effective search space used: 3511873704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)