BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0357000 Os08g0357000|AK070322
(336 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G19660.1 | chr1:6800361-6802240 REVERSE LENGTH=330 373 e-104
AT1G75380.1 | chr1:28281789-28283631 REVERSE LENGTH=326 366 e-102
AT5G66050.1 | chr5:26412333-26414428 REVERSE LENGTH=341 116 2e-26
>AT1G19660.1 | chr1:6800361-6802240 REVERSE LENGTH=330
Length = 329
Score = 373 bits (957), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/325 (55%), Positives = 246/325 (75%), Gaps = 3/325 (0%)
Query: 11 LMAMEGPILCRAVMQAKLPVT--MISNSLTKSGQLGTAFLGCVCKYRNITRLISPIYQPA 68
+ +++ P++C +V +L V+ +++ S++K+ L F G K + ++ + +
Sbjct: 1 MRSLQAPVVCPSVRPRQLGVSALLVNCSVSKTRSLRKQFWGNQTK-NDKSQAATVNLRLH 59
Query: 69 QKNFATVCGSFSSSSDGNGYMAGNFSESDEDYVNSTVLEAVEVRSGAEGYVIKMRDGKNL 128
+ + ++ FSS SDG G A NF+E+DEDYV S+VLEAVEV+SG +G+++KM+DG+ L
Sbjct: 60 LRRYKSIKCLFSSHSDGTGSTAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKDGRQL 119
Query: 129 RCVHNNSQGRNIPESAPQPAIVLRIEDGSETLLPIIVLEMPSVLLMAAIRNVHIARPTIY 188
RCVHNN QG N+P AP AIVL++EDG+ LLPIIVLEMPSVLLMAA+ NV IARPT+Y
Sbjct: 120 RCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARPTMY 179
Query: 189 QVVKEMIDKMGYEVKLVRINKRIQEAYCAELFLTKVGDHTESITFDLRPSDAINIAVRCK 248
QVVK+M+DKMGYEV+LVR+ R+ EAY AEL+L+KVGD ++ ++FDLRPSDAINIAVRCK
Sbjct: 180 QVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAVRCK 239
Query: 249 VPIQVHRSLAYSDGIRSVEPARMAIAAGMSDGLLFTELDRPDGQPCVEAQEFGLIRNMLI 308
VPIQV++ LAYSDG+R ++ +++ SDGLLFTELDRP+GQPC + +EF L+RNM+
Sbjct: 240 VPIQVNKYLAYSDGMRVIDSGKLSKQTPASDGLLFTELDRPNGQPCFDTKEFDLVRNMMQ 299
Query: 309 AAVEERYKDAATWRDKLMLLRSKRK 333
A EERY +AA WRDKL ++KRK
Sbjct: 300 AVDEERYDEAAEWRDKLGKFQAKRK 324
>AT1G75380.1 | chr1:28281789-28283631 REVERSE LENGTH=326
Length = 325
Score = 366 bits (940), Expect = e-102, Method: Compositional matrix adjust.
Identities = 168/254 (66%), Positives = 214/254 (84%)
Query: 79 FSSSSDGNGYMAGNFSESDEDYVNSTVLEAVEVRSGAEGYVIKMRDGKNLRCVHNNSQGR 138
FSS SDGNG A NF+E+DE+YVNS+V+EAVEV+SGA+G+++KMRDG+ LRCVHNN QG
Sbjct: 66 FSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRDGRQLRCVHNNPQGG 125
Query: 139 NIPESAPQPAIVLRIEDGSETLLPIIVLEMPSVLLMAAIRNVHIARPTIYQVVKEMIDKM 198
++P+ AP PAIVL++EDG+ LLPIIVLEMPSVLLMAA+ NV IARPT+YQVVKEM+DKM
Sbjct: 126 HLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARPTMYQVVKEMVDKM 185
Query: 199 GYEVKLVRINKRIQEAYCAELFLTKVGDHTESITFDLRPSDAINIAVRCKVPIQVHRSLA 258
GYEV+LVR+ KR+ EAY A+LFL+KVG+ +E ++FDLRPSDAINIAVRCK+PIQV++ LA
Sbjct: 186 GYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIAVRCKIPIQVNKYLA 245
Query: 259 YSDGIRSVEPARMAIAAGMSDGLLFTELDRPDGQPCVEAQEFGLIRNMLIAAVEERYKDA 318
YSDG+R +E +++ A SDGLLFTE DRP+GQ C++ +EF ++ M+ A EERY +A
Sbjct: 246 YSDGMRVIESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNILSKMMQAVDEERYDEA 305
Query: 319 ATWRDKLMLLRSKR 332
A WRDKL R+KR
Sbjct: 306 AEWRDKLGQFRAKR 319
>AT5G66050.1 | chr5:26412333-26414428 REVERSE LENGTH=341
Length = 340
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 105/186 (56%), Gaps = 6/186 (3%)
Query: 146 QPAIVLRIEDGSETLLPIIVLEMPSVLLMAAIRNVHIAR-PTIYQVVKEMIDKMGYEVKL 204
QP I L+I + LLP+IV + L+ H P +Q V ++DK+GYEVK+
Sbjct: 143 QPTIFLKISCDGDYLLPVIVGDAAVEKLLDVPLQGHTEECPDQFQFVSAVVDKLGYEVKM 202
Query: 205 VRINKRIQEAYCAELFLTKVGDHTESITFDLRPSDAINIAVRCKVPIQVHRSLAYSDGIR 264
V++ RI Y A L L K GD E+I D RPSDAIN+A C+ PI V++++ + I+
Sbjct: 203 VKLTGRIVNTYYASLCLGKPGD-IEAICIDSRPSDAINVARACQAPIYVNKAIVLEEAIK 261
Query: 265 SVEPARMAIAAGMSDGLLFTELDRPDGQPCVEAQEFGLIRNMLIAAVEERYKDAATWRDK 324
R A + + +L + D PD ++E L+RNM +A+ EERY DAA WRD+
Sbjct: 262 IGYGGRPQSAKPVFNVILDSAPDGPDPL----SEELKLVRNMDLASKEERYIDAAMWRDR 317
Query: 325 LMLLRS 330
L L++
Sbjct: 318 LKNLQN 323
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,857,713
Number of extensions: 275238
Number of successful extensions: 642
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 639
Number of HSP's successfully gapped: 3
Length of query: 336
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,392,385
Effective search space: 1988995245
Effective search space used: 1988995245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)