BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0338500 Os08g0338500|AK107751
         (197 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G46940.1  | chr5:19058230-19058760 REVERSE LENGTH=177           51   3e-07

>AT5G46940.1 | chr5:19058230-19058760 REVERSE LENGTH=177
          Length = 176

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 4/156 (2%)

Query: 38  GDGILLPSCKTVGGGSTYFDVQFCLDALGSVGAGAGARSYRDLAAVAVGLLTANATSTSV 97
           G  ++  SCK     S  F    C+ +L +      A++ +DLA + +   T NA + + 
Sbjct: 20  GQTLIRNSCKKATATSPKFKYNLCVTSLET---NPQAKTAKDLAGLVMAS-TKNAVTKAT 75

Query: 98  KIDALLRXXXXXXKVDAATARCLRSCRALYAGIARRQPGCAAAVRGGRLGXXXXXXXXXX 157
            +   +       KV+  TA  LR C  LY           A V+               
Sbjct: 76  TLKGTVDKIIKGKKVNKMTAMPLRDCLQLYTDAIGSLNEALAGVKSRNYPTVKTVLSAAM 135

Query: 158 XXXXXCEDGFRGGNATSPVTAEDDAAFKLAKLGVAL 193
                CE GF+   A SPVT E+D  +++  + +A 
Sbjct: 136 DTPSTCETGFKERKAPSPVTKENDNLYQMILIPLAF 171



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,065,594
Number of extensions: 95508
Number of successful extensions: 164
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 104
Effective length of database: 8,556,881
Effective search space: 889915624
Effective search space used: 889915624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)