BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0335600 Os08g0335600|AK106063
(204 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G47530.1 | chr5:19281471-19282870 FORWARD LENGTH=396 113 8e-26
AT4G17280.1 | chr4:9678887-9680277 REVERSE LENGTH=403 105 1e-23
AT3G59070.1 | chr3:21832364-21834514 REVERSE LENGTH=467 100 1e-21
AT5G35735.1 | chr5:13900913-13902934 REVERSE LENGTH=405 96 1e-20
AT5G48750.1 | chr5:19770052-19770819 REVERSE LENGTH=256 92 2e-19
AT4G12980.1 | chr4:7589670-7591074 REVERSE LENGTH=395 86 2e-17
AT3G25290.1 | chr3:9208955-9210353 FORWARD LENGTH=394 83 1e-16
AT3G07390.1 | chr3:2365452-2366273 FORWARD LENGTH=274 82 3e-16
AT2G04850.1 | chr2:1704298-1705608 FORWARD LENGTH=405 62 2e-10
>AT5G47530.1 | chr5:19281471-19282870 FORWARD LENGTH=396
Length = 395
Score = 113 bits (282), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 94/160 (58%), Gaps = 7/160 (4%)
Query: 43 NQQYGSCATLPRLGATLHYNYXXXXXXXXXXFRAPQPAGGKGWVAWGINPSGSGMVGTQA 102
N+ + SC LP L + LHY Y +R + GK WVAW +NP+ +GMVG QA
Sbjct: 35 NRLFESCNDLPVLDSFLHYTYDSSSGNLQIAYRHTKLTPGK-WVAWAVNPTSTGMVGAQA 93
Query: 103 VVAFRHSNGSLVAYPTVLGSYAPSMAPAAAKDLALPVSGVSAEENGKAKEVVVYATVALP 162
+VA+ S+G++ AY + + SY S+ A +L+ VS +SA + E+V+YA + LP
Sbjct: 94 IVAYPQSDGTVRAYTSPISSYQTSLLEA---ELSFNVSQLSATY--QNNEMVIYAILNLP 148
Query: 163 AGKGTKFNHVWQQGSSVAGDVPAAHPTSGDNVLSVGSIDF 202
G N VWQ G S++G+ P HPTSG+NV SV +++
Sbjct: 149 LANGGIINTVWQDG-SLSGNNPLPHPTSGNNVRSVSTLNL 187
>AT4G17280.1 | chr4:9678887-9680277 REVERSE LENGTH=403
Length = 402
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 91/162 (56%), Gaps = 9/162 (5%)
Query: 43 NQQYGSCATLPRLGATLHYNYXXXXXXXXXXFRAPQPAGGKGWVAWGINPSGSGMVGTQA 102
N + SC LP L + LHY Y +R + GK WVAW +NP+ +GMVG QA
Sbjct: 42 NNVFDSCNDLPFLDSFLHYTYESSTGSLHIAYRHTKLTSGK-WVAWAVNPTSTGMVGAQA 100
Query: 103 VVAFRHSNGSLVAYPTVLGSYAPSMAPAAAKDLALPVSGVSAEENGKAKEVVVYATVAL- 161
+VA+ S+G++ Y + + SY S+ DL+ VSG+SA + E+VV A++ L
Sbjct: 101 IVAYPQSDGTVRVYTSPIRSYQTSLLEG---DLSFNVSGLSATY--QNNEIVVLASLKLA 155
Query: 162 -PAGKGTKFNHVWQQGSSVAGDVPAAHPTSGDNVLSVGSIDF 202
G G N VWQ G S++G+ HPTSG+NV SV +++
Sbjct: 156 QDLGNGGTINTVWQDG-SMSGNSLLPHPTSGNNVRSVSTLNL 196
>AT3G59070.1 | chr3:21832364-21834514 REVERSE LENGTH=467
Length = 466
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 88/161 (54%), Gaps = 10/161 (6%)
Query: 44 QQYGSCATLPRLGATLHYNYXXXXXXXXXXFRAPQPAGGKGWVAWGINPSGSGMVGTQAV 103
+ + SC L L + LH+NY + W++W INP+ GMVG QA+
Sbjct: 46 KSFRSCTDLLVLNSYLHFNYAQETGVLEIAYHHSNLESS-SWISWAINPTSKGMVGAQAL 104
Query: 104 VAFRHS-NGSLVAYPTVLGSYAPSMAPAAAKDLALPVSGVSAE-ENGKAKEVVVYATVAL 161
VA+R+S +G + AY + + SY+P + + L+L V+ VSAE NG E++++AT+ L
Sbjct: 105 VAYRNSTSGVMRAYTSSINSYSPMLQESP---LSLRVTQVSAEYSNG---EMMIFATLVL 158
Query: 162 PAGKGTKFNHVWQQGSSVAGDVPAAHPTSGDNVLSVGSIDF 202
P T NH+WQ G GD H SGDN+ S+ S+D
Sbjct: 159 PPNT-TVVNHLWQDGPLKEGDRLGMHAMSGDNLKSMASLDL 198
>AT5G35735.1 | chr5:13900913-13902934 REVERSE LENGTH=405
Length = 404
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 88/161 (54%), Gaps = 9/161 (5%)
Query: 43 NQQYGSCATLPRLGATLHYNYXXXXXXXXXXFRAPQPAGGKGWVAWGINPSGSGMVGTQA 102
N + C+ L LG+ LH+ Y +R P + WVAWG+NPS + MVGTQA
Sbjct: 37 NLAFADCSDLSALGSFLHWTYNEQNGTVSIAYRHPGTSASS-WVAWGLNPSSTQMVGTQA 95
Query: 103 VVAFRH-SNGSLVAYPTVLGSYAPSMAPAAAKDLALPVSGVSAEENGKAKEVVVYATVAL 161
+VAF + + AY + + SY + ++ L+ VSG+SA + EV ++AT+ L
Sbjct: 96 LVAFTNTTTNQFQAYTSSVSSYGTRLERSS---LSFGVSGLSATL--VSGEVTIFATLEL 150
Query: 162 PAGKGTKFNHVWQQGSSVAGDVPAAHPTSGDNVLSVGSIDF 202
T N +WQ G V G VPA+H TSGDN+ S G IDF
Sbjct: 151 SPNLITA-NQLWQVGPVVNG-VPASHQTSGDNMRSSGRIDF 189
>AT5G48750.1 | chr5:19770052-19770819 REVERSE LENGTH=256
Length = 255
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 84/160 (52%), Gaps = 8/160 (5%)
Query: 44 QQYGSCATLPRLGATLHYNYXXXXXXXXXXFRAPQPAGGKGWVAWGINPSGSGMVGTQAV 103
+ + SC LP L + LHY+Y +R W+AWGINP+ GM+G Q +
Sbjct: 43 KHFRSCVDLPVLDSFLHYSYVRETGVLEVAYRHTNIESS-SWIAWGINPTSKGMIGAQTL 101
Query: 104 VAFRHS-NGSLVAYPTVLGSYAPSMAPAAAKDLALPVSGVSAEENGKAKEVVVYATVALP 162
+A+R+S +G + AY + + Y P + L+ V+ +SAE +E+ ++AT+ P
Sbjct: 102 LAYRNSTSGFMRAYTSSINGYTPMLQEGP---LSFRVTQLSAEY--LNREMTIFATMVWP 156
Query: 163 AGKGTKFNHVWQQGSSVAGDVPAAHPTSGDNVLSVGSIDF 202
+ T NH+WQ G GD H SG+++ S+ ++D
Sbjct: 157 SNT-TVVNHLWQDGPLKEGDRLGMHAMSGNHLKSMANLDL 195
>AT4G12980.1 | chr4:7589670-7591074 REVERSE LENGTH=395
Length = 394
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 87/166 (52%), Gaps = 13/166 (7%)
Query: 44 QQYGSCATLPRLGATLHYNYXXXXXXXXXXFRAPQPAGGKGWVAWGINPSGSGMVGTQAV 103
+ Y C LP L A LHY+Y F AP P+ GW+AW INP +GM G+QA+
Sbjct: 38 KSYPHCLDLPDLKAILHYSYDASNTTLAVVFSAP-PSKPGGWIAWAINPKSTGMAGSQAL 96
Query: 104 VAFRHSNGSLVAYPTV-LGSYAPSMAPAAAKDLALPVSGVSAEE---NGKAKEVVVYATV 159
VA + + + + T+ + SY+ S+ P+ L+ V V AEE +G A ++A V
Sbjct: 97 VASKDPSTGVASVTTLNIVSYS-SLVPS---KLSFDVWDVKAEEAANDGGALR--IFAKV 150
Query: 160 ALPAGKGT--KFNHVWQQGSSVAGDVPAAHPTSGDNVLSVGSIDFS 203
+PA K N VWQ G V+ AH SG N+ SVGS+D +
Sbjct: 151 KVPADLAASGKVNQVWQVGPGVSNGRIQAHDFSGPNLNSVGSLDLT 196
>AT3G25290.1 | chr3:9208955-9210353 FORWARD LENGTH=394
Length = 393
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 12/166 (7%)
Query: 43 NQQYGSCATLPRLGATLHYNYXXXXXXXXXXFRAPQPAGGKGWVAWGINPSGSGMVGTQA 102
++ Y C LP+L A LHY+Y F AP PA GW+AW INP +GMVG+Q
Sbjct: 36 DKTYPHCLDLPQLKAFLHYSYDASNTTLAVVFSAP-PAKPGGWIAWAINPKATGMVGSQT 94
Query: 103 VVAFRH-SNGSLVAYPTVLGSYAPSMAPAAAKDLALPVSGVSAEENGK-AKEVVVYATVA 160
+VA++ NG V + SY+ S+ P+ LA V + AEE + + ++A V
Sbjct: 95 LVAYKDPGNGVAVVKTLNISSYS-SLIPS---KLAFDVWDMKAEEAARDGGSLRIFARVK 150
Query: 161 LPA---GKGTKFNHVWQQGSSVA-GDVPAAHPTSGDNVLSVGSIDF 202
+PA KG K N VWQ G + G + H N+ S+ S+D
Sbjct: 151 VPADLVAKG-KVNQVWQVGPELGPGGMIGRHAFDSANLASMSSLDL 195
>AT3G07390.1 | chr3:2365452-2366273 FORWARD LENGTH=274
Length = 273
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 73/159 (45%), Gaps = 5/159 (3%)
Query: 46 YGSCATLPRLGATLHYNYXXXXXXXXXXFRAPQPAGGKGWVAWGINPSGSGMVGTQAVVA 105
+ SC LP L + LHY Y F A GWVAW INP+G+ M G+QA +A
Sbjct: 61 FDSCEDLPVLNSYLHYTYNSSNSSLSVAFVATPSQANGGWVAWAINPTGTKMAGSQAFLA 120
Query: 106 FRHSNGSLVAYPTVLGSYAPSMAPAAAKDLALPVSGVSAEENGKAKEVVVYATVALPAGK 165
+R G A P V S + LA + AE + + ++ TV +PAG
Sbjct: 121 YRSGGG---AAPVVKTYNISSYSSLVEGKLAFDFWNLRAESLSGGR-IAIFTTVKVPAGA 176
Query: 166 GTKFNHVWQQGSSVAGDVPAAHPTSGDNVLSVGSIDFSK 204
+ N VWQ G +V P HP DN+ S + F++
Sbjct: 177 DS-VNQVWQIGGNVTNGRPGVHPFGPDNLGSHRVLSFTE 214
>AT2G04850.1 | chr2:1704298-1705608 FORWARD LENGTH=405
Length = 404
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
Query: 43 NQQYGSCATLPRLGATLHYNYXXXXXXXXXXFRAPQPAGGKGWVAWGINP-SGSGMVGTQ 101
+ + C +LP A++ + Y F + GWV WGINP S + M G++
Sbjct: 31 TKSFEKCISLPTQQASIAWTYHPHNATLDLCFFGTFISP-SGWVGWGINPDSPAQMTGSR 89
Query: 102 AVVAFRHSN-GSLVAYPTVLGSYAP-SMAPAAAKDLAL-PVSGVSAEENG-------KAK 151
++AF N G L+ P VL S P ++ L L +S SA G
Sbjct: 90 VLIAFPDPNSGQLILLPYVLDSSVKLQKGPLLSRPLDLVRLSSSSASLYGGKMATIRNGA 149
Query: 152 EVVVYATVALPAGKGTKFNHVWQQGSSVAGDVPAAHPTSGDNVLSVGSID 201
V +YA+V L + TK +HVW +G V G P HPT+ ++ S + D
Sbjct: 150 SVQIYASVKL-SSNNTKIHHVWNRGLYVQGYSPTIHPTTSTDLSSFSTFD 198
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.129 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,608,288
Number of extensions: 147635
Number of successful extensions: 205
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 9
Length of query: 204
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 110
Effective length of database: 8,529,465
Effective search space: 938241150
Effective search space used: 938241150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 109 (46.6 bits)