BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0328300 Os08g0328300|AK105392
(458 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13020.1 | chr5:4129691-4132089 REVERSE LENGTH=398 361 e-100
AT2G44440.1 | chr2:18336621-18338950 REVERSE LENGTH=430 298 4e-81
AT5G06780.1 | chr5:2094147-2096377 REVERSE LENGTH=321 175 6e-44
AT3G12140.3 | chr3:3869121-3870964 REVERSE LENGTH=384 168 5e-42
AT3G57960.1 | chr3:21463091-21464194 FORWARD LENGTH=224 53 4e-07
AT3G57970.1 | chr3:21465226-21466677 FORWARD LENGTH=320 50 2e-06
>AT5G13020.1 | chr5:4129691-4132089 REVERSE LENGTH=398
Length = 397
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 206/421 (48%), Positives = 264/421 (62%), Gaps = 28/421 (6%)
Query: 1 MDYNPVDSSGTDDDLPPTYQXXXXXXXXXXXXXXXDIVSAVPYNRTKPQTDMETQIHQLE 60
MDY P DSSGTDDDLPP++Q ++++ P +R +METQIH +E
Sbjct: 1 MDYRPSDSSGTDDDLPPSHQGRYQRNARPTGNGRPSVLNSAPLSRV--HNEMETQIHLIE 58
Query: 61 QDAYCSVLRAFKAQSDAISWEKEGLITELRKELRVSDKEHRELLNRVNGDDIIQRIREWR 120
Q+AY S+LRAFKAQSDAI+WEKE LITELRKELRVSD+EHRELL+RVN D++I+RIREWR
Sbjct: 59 QEAYSSILRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADEMIRRIREWR 118
Query: 121 ETKGGLQADMVNNAQRSHDRVPSPTTS-ARKRQKTSQSIXXXXXXXXXXXXHSQTLTAPM 179
+ LQ+ + Q HD PSP S +RK+QKTSQSI S +L M
Sbjct: 119 KANS-LQSSV---PQLVHD-APSPAVSGSRKKQKTSQSIASLAMGPP-----SPSLHPSM 168
Query: 180 QPLSSAXXXXXXXXXXXXXXXXXXXXXXXSAIKTMSSAGPSGRGPIMNKNLSGGLPTEPI 239
QP SSA + I AG G + N+ P E
Sbjct: 169 QPSSSALRRGGPPPGPKTKKPKTSMQYPSTGI-----AGRPQAGALTNE------PGESG 217
Query: 240 SVNPLIGRKVMTRWPDDNSFYEAVITDYDPQLDRYALVYDINTADETWEWVDFKEMAPED 299
S +PL+GRKV T+WPDDN +YEAVITDY+P R+ALVYDIN+A+ETWEWV+ KE++P D
Sbjct: 218 SYDPLVGRKVWTKWPDDNQYYEAVITDYNPVEGRHALVYDINSANETWEWVNLKEISPGD 277
Query: 300 IRWEGGDPGIIQQGRGATVHGGKKXXXXXXXXXXXXXXXXXXQKNTSRKEFPPSQNGVGK 359
IRWEG DPGI ++G H G+ + + R + P +QNG+GK
Sbjct: 278 IRWEGEDPGISRKGG----HPGQGRGTKTMARGGPASNAGGRGRGSMRMQQPKTQNGIGK 333
Query: 360 KSSDCIEILHTESLIKEVERVFSASNPDPLEMEKAKKVLKEHEQSLIDAIARLAEASDGE 419
K+ IEILHTE+L+KEVE+VF + NP+P E+EKAK+VL++HE +L+DAIA+L E SDGE
Sbjct: 334 KALGEIEILHTETLLKEVEKVFGSVNPNPAEVEKAKRVLRDHELALMDAIAKLEEISDGE 393
Query: 420 S 420
S
Sbjct: 394 S 394
>AT2G44440.1 | chr2:18336621-18338950 REVERSE LENGTH=430
Length = 429
Score = 298 bits (763), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 174/379 (45%), Positives = 219/379 (57%), Gaps = 18/379 (4%)
Query: 51 DMETQIHQLEQDAYCSVLRAFKAQSDAISWEKEGLITELRKELRVSDKEHRELLNRVNGD 110
DME QIHQ+E++AY SVLRAFKAQ DAISWEKE +ITELRKEL +S++EHRELL RVN D
Sbjct: 56 DMEAQIHQIEKEAYISVLRAFKAQGDAISWEKESVITELRKELSLSNEEHRELLGRVNSD 115
Query: 111 DIIQRIREWRETKGGLQADMVNNAQRSHDRVPSPTTSAR-KRQKTSQSIXXXXXXXXXXX 169
D I+RIREWR++ GG+Q M N AQ HD +PSP+ SA K K +Q I
Sbjct: 116 DTIRRIREWRQS-GGMQPSMRNAAQVVHDTLPSPSVSASMKTHKPNQPIPSQPFASSSPS 174
Query: 170 XHSQTLTAPMQPLSSAXXXXXXXXXXXXXXXXXXXXXXXSAIKTMSSAGPSG---RGPIM 226
H Q P P +S+ S + PS RG +M
Sbjct: 175 FHPQ--ADPTHPFASSTAKRGPVPIVKGKKHKPVFPGSSST--KHAPYHPSDQPPRGQVM 230
Query: 227 NK----NLSGGLPTEPISVNPLIGRKVMTRWPDDNSFYEAVITDYDPQLDRYALVYDINT 282
N+ S PT I +GR+V T+WP+DN+FY+A+IT Y+P R+ALVYDI T
Sbjct: 231 NRLPSVPASSSEPTNGIDPESFLGRRVRTKWPEDNTFYDAIITQYNPVEGRHALVYDIAT 290
Query: 283 ADETWEWVDFKEMAPEDIRWEGGDPGIIQQGRGATVHGGKKXXXXXXXXXXXXXXXXXXQ 342
ETWEWV E++P DI W G DPG+ G +G +
Sbjct: 291 PSETWEWVRLSEISPGDIEWIGEDPGL-----GNRYNGQGHGLNRTTGPNCVPQRGSGLE 345
Query: 343 KNTSRKEFPPSQNGVGKKSSDCIEILHTESLIKEVERVFSASNPDPLEMEKAKKVLKEHE 402
KNT RK F SQNG GKK I I T+ LI+EVERV + NPDP E+E+AK+VL+EHE
Sbjct: 346 KNTIRKGFRTSQNGTGKKKHLDIRIRQTDVLIREVERVLRSHNPDPYEVERAKRVLEEHE 405
Query: 403 QSLIDAIARLAEASDGESE 421
+L+ AIA+L + SDGE+E
Sbjct: 406 HALVGAIAKLGDISDGENE 424
>AT5G06780.1 | chr5:2094147-2096377 REVERSE LENGTH=321
Length = 320
Score = 175 bits (443), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 136/229 (59%), Gaps = 32/229 (13%)
Query: 211 IKTMSSAGPSGRGPIMNKNLSGGLPTEPISVNPLIGRKVMTRWPDDNSFYEAVITDYDPQ 270
++ S G + N+ +S P E LIGRKV T+WP+DNSFYEAV+T Y+
Sbjct: 107 FQSYPSIGSTRSKSFNNRVVSANEPAEA-----LIGRKVWTKWPEDNSFYEAVVTQYNAN 161
Query: 271 LDRYALVYDINTADETWEWVDFKEMAPEDIRWEGGDPGI---IQQGRGAT-------VHG 320
R+ALVYDINT +ETWEWVD E+ +DIRW+G + G+ + G G T HG
Sbjct: 162 EGRHALVYDINTVNETWEWVDLNEIPTKDIRWDGEEDGVTLNVGHGGGTTRGNRRTLSHG 221
Query: 321 GKKXXXXXXXXXXXXXXXXXXQKNTSRKEFPPSQNGVGKKSSDCIEILHTESLIKEVERV 380
G+ + R+E ++NG G+K IE+ +T+SL+KEVERV
Sbjct: 222 GR----------------GRGPRTQPRREHLATENGGGRKFFGEIELFNTDSLVKEVERV 265
Query: 381 FSASNPDPLEMEKAKKVLKEHEQSLIDAIARLAEASDGESEERAQPLQH 429
F ++ PDP E++KAKK+LKEHEQ+LI AIARL +ASD ES+ +P H
Sbjct: 266 FDSNLPDPHELDKAKKLLKEHEQALIAAIARLTDASDYESDGE-EPYSH 313
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 79/108 (73%), Gaps = 6/108 (5%)
Query: 51 DMETQIHQLEQDAYCSVLRAFKAQSDAISWEKEGLITELRKELRVSDKEHRELLNRVNGD 110
+ME QIH LEQ+AY +VLRAF+AQ+D SW+K ++T LRKELR+SD E+R+LLN V+ D
Sbjct: 7 NMEAQIHILEQEAYSAVLRAFQAQADEFSWDKATVMTNLRKELRISDDENRQLLNNVHND 66
Query: 111 DIIQRIREWRETKGGLQADMVNNAQRSHDRVPSPTTSA-RKRQKTSQS 157
D+I+RIR+ R +GG Q +S D PSPT SA RK+QKT QS
Sbjct: 67 DLIKRIRDSR-PRGGNQVVR----HQSLDVHPSPTFSASRKKQKTFQS 109
>AT3G12140.3 | chr3:3869121-3870964 REVERSE LENGTH=384
Length = 383
Score = 168 bits (426), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 137/219 (62%), Gaps = 31/219 (14%)
Query: 216 SAGPSGRGPIMNKNLSGGLPTEPISVNPLIGRKVMTRWPDDNSFYEAVITDYDPQLDRYA 275
S G +G N+ +S G+ S LIGRKV T+WP+DN FYEA+IT Y+ R+A
Sbjct: 109 SIGATGNRSFNNRLVSSGISGNE-SAEALIGRKVWTKWPEDNHFYEAIITQYNADEGRHA 167
Query: 276 LVYDINTADETWEWVDFKEMAPEDIRWEGGDPGI----------IQQGRGATVHGGKKXX 325
LVYDI+ A+ETWEWVD KE+ PEDIRW+G + G+ + R +HGG+
Sbjct: 168 LVYDIHAANETWEWVDLKEIPPEDIRWDGEESGVALNIGHGSASFRGNRRGQIHGGR--- 224
Query: 326 XXXXXXXXXXXXXXXXQKNTSRKEF---PPSQNGVG--KKSSDCIEILHTESLIKEVERV 380
+ + R+E P QNG G + SSD IE+ +T+SL+KEVERV
Sbjct: 225 ------------GRGPRIHQPRRELVPPPTQQNGSGGRRTSSDDIELFNTDSLVKEVERV 272
Query: 381 FSASNPDPLEMEKAKKVLKEHEQSLIDAIARLAEASDGE 419
F +++PDPLE++KAKK+LKEHEQ+LI AIARLA+ SDGE
Sbjct: 273 FDSTHPDPLELDKAKKMLKEHEQALIAAIARLADTSDGE 311
Score = 137 bits (346), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 74/104 (71%), Positives = 83/104 (79%), Gaps = 3/104 (2%)
Query: 52 METQIHQLEQDAYCSVLRAFKAQSDAISWEKEGLITELRKELRVSDKEHRELLNRVNGDD 111
METQIHQLEQ+AY +VLRAFKAQSDAISWEKE LITELRKELRVSD EHRELL+RVN DD
Sbjct: 1 METQIHQLEQEAYTAVLRAFKAQSDAISWEKESLITELRKELRVSDDEHRELLSRVNKDD 60
Query: 112 IIQRIREWRETKGGLQADMVNNAQRSHDRVPSPTTS-ARKRQKT 154
IQRIR+WR+ GG + + D +PSPT S ARK+QKT
Sbjct: 61 TIQRIRDWRQ--GGASQITRHATIQPFDVLPSPTFSAARKKQKT 102
>AT3G57960.1 | chr3:21463091-21464194 FORWARD LENGTH=224
Length = 223
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 240 SVNP--LIGRKVMTRWPDDNSFYEAVITDYDPQLDRYALVYDINTADET-----WEWVDF 292
SVNP LIG+ V R PD F E +I YD + + ++L+ + + E + W+D
Sbjct: 134 SVNPESLIGKWVSIRLPDKAKFTEYIIKAYDAEKEMHSLLTETSNPMEVDCIDPFRWIDI 193
Query: 293 KEMAPEDIRWEGGD-PGIIQQGRGATVHG 320
++++P DI WEGG P + A G
Sbjct: 194 RDISPNDIMWEGGQKPNFAAPNQSAAATG 222
>AT3G57970.1 | chr3:21465226-21466677 FORWARD LENGTH=320
Length = 319
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 239 ISVNPLIGRKVMTRWPDDNSFYEAVITDYDPQLDRYALVYDINTAD--ETWEWVDFKEMA 296
+S L+GR+V + PD++ + E +IT YD + + L+ + D + WVD + +
Sbjct: 196 VSPGSLVGRRVHIQMPDEDEYIEFLITKYDANTETHHLLSAFSNKDYEDPCNWVDLRHVQ 255
Query: 297 PEDIRWEGGDPGI 309
ED++W GDP +
Sbjct: 256 AEDMKWPEGDPDL 268
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,168,798
Number of extensions: 358052
Number of successful extensions: 888
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 879
Number of HSP's successfully gapped: 8
Length of query: 458
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 356
Effective length of database: 8,310,137
Effective search space: 2958408772
Effective search space used: 2958408772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 113 (48.1 bits)