BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0324300 Os08g0324300|AK068359
(270 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G33280.1 | chr4:16047357-16049310 REVERSE LENGTH=338 65 5e-11
AT3G18990.1 | chr3:6549077-6551568 REVERSE LENGTH=342 56 2e-08
AT5G66980.1 | chr5:26741563-26742826 FORWARD LENGTH=335 54 9e-08
AT3G53310.1 | chr3:19766927-19768368 REVERSE LENGTH=287 50 2e-06
AT3G18960.1 | chr3:6542618-6543568 FORWARD LENGTH=210 49 3e-06
>AT4G33280.1 | chr4:16047357-16049310 REVERSE LENGTH=338
Length = 337
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 7/176 (3%)
Query: 1 MGTSCERCRRRDEQDYRNLDDSQKHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQLET 60
M +CE C + +E+ Y + HF ++ F + ++IP++F K +P + L++
Sbjct: 1 MEENCEDCMKWEEELYWTHFQTL-HFTQLLLPGFHNRLVIPRKFSTHCKRKLPQIVTLKS 59
Query: 61 RNRNSHTVRVDKTQEKVI-FTEGWAQFVKTFDLQMGDSMMFRFNGNSQFDVIIVD-QIGR 118
+ ++ V V++ EK + F GW +FVK L+ D ++F+F+G S+F+V++ D Q
Sbjct: 60 PSGVTYNVGVEEDDEKTMAFRFGWDKFVKDHSLEENDLLVFKFHGVSEFEVLVFDGQTLC 119
Query: 119 EKACSAVV---DDSQNPNVQERRVDATETLNSS-RAHSQPMPMQSTTETVNHSHAR 170
EK S V ++ + E +NS S +P+ S T TV S +
Sbjct: 120 EKPTSYFVRKCGHAEKTKASHTGYEQEEHINSDIDTASAQLPVISPTSTVRVSEGK 175
>AT3G18990.1 | chr3:6549077-6551568 REVERSE LENGTH=342
Length = 341
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 13/166 (7%)
Query: 35 QHEMIIPKEFVQRLKGDIPGEIQLETRNRNSHTVRVDKTQEKVIFTEGWAQFVKTFDLQM 94
+ + +P +FV + K ++ + L + + V + K K+ F +GW +FV + +++
Sbjct: 17 EKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRI 76
Query: 95 GDSMMFRFNGNSQFDVIIVDQIGRE--KACSAVVDDSQNPNVQERRVDATETLNSSR--- 149
G ++FR+ GNS F V I + E + ++D + N + R + E ++
Sbjct: 77 GYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARLFEDLEDEDAEVIFP 136
Query: 150 AHSQPMPMQSTTETVNHSHARPCPMHTAVDCM---PLSHAHPQPMP 192
+ P P+ +T N +A +A+ + P+ P P P
Sbjct: 137 SSVYPSPLPESTVPANKGYA-----SSAIQTLFTGPVKAEEPTPTP 177
>AT5G66980.1 | chr5:26741563-26742826 FORWARD LENGTH=335
Length = 334
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 26 FLLTMMGDF-QHEMIIPKEFVQRLKGDIPGEIQL--ETRNRNSHTVRVDKTQEK--VIFT 80
F + +F HE++IP F+ L+ +P E L E + + T+E+ V FT
Sbjct: 10 FFKVFLPEFGSHELVIPPAFIDMLEKPLPKEAFLVDEIGRLWCVETKTEDTEERFCVFFT 69
Query: 81 EGWAQFVKTFDLQMGDSMMFRFNGNSQFDVIIVDQIGREKACSAV 125
+GW F L+ GD ++F ++G+S+F V I G +K V
Sbjct: 70 KGWQSFANDQSLEFGDFLVFSYDGDSRFSVTIFANDGCKKDVGVV 114
>AT3G53310.1 | chr3:19766927-19768368 REVERSE LENGTH=287
Length = 286
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 20 DDSQ---KHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQLETRNRNSHTVRVDKTQEK 76
DDS+ + F + ++ ++IP F+ L +P ++L+ TV + K
Sbjct: 3 DDSELYPRFFKVFLVESASESLMIPLPFMAFLADPLPKTVKLQGLGGKLWTVSLKKISGA 62
Query: 77 VIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQFDVIIVDQIGREKACSAV----VDDSQNP 132
T GW +F + +L+ G+ M F ++G+ F+V + D+ G ++ + + + DS +
Sbjct: 63 AYLTRGWPKFAEEHELKNGEFMTFVYDGHRTFEVSVFDRWGSKEVRAEIQAIPLSDSDSD 122
Query: 133 NVQE 136
+V E
Sbjct: 123 SVVE 126
>AT3G18960.1 | chr3:6542618-6543568 FORWARD LENGTH=210
Length = 209
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 10 RRDEQDYRNLDDSQKHFLLTMMGDFQHEMI-IPKEFVQRLKGDIPGEIQLETRNRNSHTV 68
RR +QD + +K F L + + +M+ IP FV+ + + LET ++
Sbjct: 17 RRSQQDPES--PVKKFFKLVLPSTMKDKMMKIPPRFVKLQGSKLSEVVTLETPAGFKRSI 74
Query: 69 RVDKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQFDVIIVD 114
++ + E++ F EGW++F + ++ G ++F + NS F VII +
Sbjct: 75 KLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFN 120
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.131 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,315,460
Number of extensions: 217416
Number of successful extensions: 715
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 714
Number of HSP's successfully gapped: 6
Length of query: 270
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 173
Effective length of database: 8,447,217
Effective search space: 1461368541
Effective search space used: 1461368541
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)