BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0318500 Os08g0318500|AK070862
(1058 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G10380.1 | chr3:3219922-3228356 REVERSE LENGTH=1054 1216 0.0
>AT3G10380.1 | chr3:3219922-3228356 REVERSE LENGTH=1054
Length = 1053
Score = 1216 bits (3145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/1068 (58%), Positives = 802/1068 (75%), Gaps = 36/1068 (3%)
Query: 10 IFDGLPIPADKSYLKEGLSRIDEGWAAARFDSLPHVVHILTSKDREGEIQFLKEQSDLIE 69
IF+GLP+P+DK+YL+E L+RIDE WAAARFDSLPHVVHILTSKDRE +I LKEQSD++E
Sbjct: 3 IFNGLPVPSDKTYLREELARIDESWAAARFDSLPHVVHILTSKDREADIHILKEQSDVVE 62
Query: 70 DVVDEVVHAYHHGFNKAIQNYSQILRLFSESAESITGLKGEMAEAKKLLGRKNKHLGQLW 129
+VVDEVVHAYH GFNKAIQNYSQILRLFSES E I LK ++AEAK+ LG +NK L QLW
Sbjct: 63 EVVDEVVHAYHGGFNKAIQNYSQILRLFSESTEKIGDLKHDLAEAKQSLGARNKQLHQLW 122
Query: 130 YRSLTLRHVLSLLDQVEDVAKVPARIENLMAEKQLYAAVQLHVQSMLMLEREGLQAVGAL 189
YRS+TLRH++SLLDQ+E +AKVP+RIE L+A+KQ YAA+Q+++QS LMLEREGLQ VGAL
Sbjct: 123 YRSVTLRHIISLLDQIEGIAKVPSRIEKLIADKQFYAAIQVYLQSSLMLEREGLQTVGAL 182
Query: 190 QDVRSDLAKLRGVLFYKILEELHSHLYNNGEYSSVTLSMVD-NEELPTSTATGRLVNSMQ 248
QDVRS+L KLRG LF+KIL++LH+HLYN GEYSSV S+ + ++E+PT+TA S Q
Sbjct: 183 QDVRSELTKLRGALFFKILDDLHAHLYNRGEYSSVASSIYERDDEVPTTTAVAASRMSSQ 242
Query: 249 PLSRRTRSIKGDNHFGASA--DGIPKTXXXXXXXXXXXXXXXXXXMHEXXXXXXX---XX 303
PLSRRTR++KGD+ FG +G +T H+
Sbjct: 243 PLSRRTRTLKGDSQFGVRGLTNGSYRTASNDESSSFDGHDEEDSVEHDESTADTARNGTD 302
Query: 304 XXXXXXEVPIFLSCATPDEFLESVTKADASLSVKYLRTLVQCLSMLGKVAAAGAVICQRV 363
++P +LS +TPDEF+E+V K+D L VKYL+TLVQCL MLGKVAAAGA+ICQ++
Sbjct: 303 SKLLSHQLPPWLSDSTPDEFIEAVRKSDDPLHVKYLQTLVQCLCMLGKVAAAGAIICQKL 362
Query: 364 RPTIHDVITSKIRAYSEETSKSNVNKAANENSDVSHS------NGRAARYQLLKQKTKNG 417
RPTIH++I SKI+A+ E T N++K+A D S + G++ Y+L K+K +NG
Sbjct: 363 RPTIHEIIISKIKAHLETT---NLSKSACSQGDRSVAAGLHLIKGQSEAYRLSKEKPQNG 419
Query: 418 ASLMASQLVVSPISPAMAPTGDAQCAASQLLSAIFECLVDILENHITVGELLEQKSSTEV 477
S + L VSP+SP MAP G AQ AA +LL +I + +V I ENH+ +GELLE K+S
Sbjct: 420 ISNSGTHLAVSPVSPLMAPGGKAQAAAKELLDSILDTIVKIFENHVVIGELLEMKASQH- 478
Query: 478 DNANTPHMANGDASWNPDSESSQATGGFTVAFSLSVVQSECQQLLCEILRXXXXXXXXXX 537
+ NTP D +WN +SE+SQATGG+T++F L+V+QSECQQL+CEILR
Sbjct: 479 -DINTPRSLPTDVNWNTESEASQATGGYTISFPLTVLQSECQQLICEILRATPEAASADA 537
Query: 538 XXXXXXXXNKDPVKEKRDGSE-GLSFAFRITDAAITAPNEG-----QGW-RRNSTVPQEG 590
K P K+KRD E GL+F FR TDA ++ N+G QGW +R EG
Sbjct: 538 AAQTAKLAKKAPKKDKRDAPEDGLTFTFRFTDATVSISNQGADLIRQGWGKRAPNASLEG 597
Query: 591 YGTASVIPDQGIFLAASVYRPVFEFMNKIGLMLPQKYWQLGNDGLLAFVNNFLKEHFLPA 650
YG+A+V+P+QGI+LAAS+YRPV +F +KI MLP+K+ QL NDGLL F NF+K+H LP
Sbjct: 598 YGSAAVLPEQGIYLAASIYRPVLQFTDKITSMLPKKHSQLVNDGLLTFTENFVKDHLLPT 657
Query: 651 IFVDYRKCVQQAISSPAAFRPRVHATSVYSPLVENGRPVLQGLLAVDIIAKEVLGWVQLM 710
+FVDYRK VQQAISS AAFRPR H T+ Y+ VE GRP+LQGLLA+D++AKEVLGW Q M
Sbjct: 658 MFVDYRKGVQQAISSAAAFRPRAH-TTTYTATVEKGRPILQGLLAIDLLAKEVLGWAQAM 716
Query: 711 PNYATELVEYVRTFLERTHERCRASYMEAVLEKQSYILLSRNDVESLMRLDPANLSLQNS 770
P +AT+LV+YV+TFLERT ERCR SYMEAVLEK SY+L+ R+D+E LMRLD A+ L ++
Sbjct: 717 PKFATDLVKYVQTFLERTFERCRTSYMEAVLEKLSYMLIGRHDIEKLMRLDAASACLPST 776
Query: 771 FGQLDHSIPDAEAVEVEIELSDLLLDMCPIKQENLIHDDQKLILLASLSDSLEYLADSVE 830
G H++ +EAV E+ELSDL L + PIKQ+NLI DD KLILLASLSDSLEY+ADS+E
Sbjct: 777 LG---HAVSHSEAVGTEVELSDLFLSLRPIKQDNLIRDDNKLILLASLSDSLEYVADSIE 833
Query: 831 RLGESFINSSTMLENKNHIHQGRHTRSTSAIPKSLASLANEYRRLAIDCVRVLRLEMQLE 890
RLG++ ++ E ++R+ +A P++LAS A+EYR+LA DC++VLR+EMQLE
Sbjct: 834 RLGQAVPRVASQAEG--------NSRNQAASPRNLASFADEYRKLATDCLKVLRVEMQLE 885
Query: 891 TIYHMQEMTKREYVEDQDAEDPDDFIISLTTQIARRDEEMAPYIAESKRNYVFGGISSVA 950
T++H+QEMT REY+ED+DAE+PDDF+ISLT+QI RR+E MAP+I+ KRNYVFGGIS +A
Sbjct: 886 TVFHLQEMTNREYLEDEDAEEPDDFVISLTSQITRREEGMAPFISGEKRNYVFGGISGIA 945
Query: 951 ANASIKALAQMKSINLLGVQQICRNSIALEQALAAIPSIDSEAVQQRIDRVRTFYELLNL 1010
ANASIKALA M+SINL GVQQICRN+IA+EQA+AAIP ID E VQQ +DRVRT++ELLN+
Sbjct: 946 ANASIKALADMRSINLFGVQQICRNTIAVEQAMAAIPYIDGETVQQNLDRVRTYFELLNM 1005
Query: 1011 PFESLLGFIAEHEYLFSAKEYLSVLKVNVPGREMPMDAERRISQILGH 1058
PFE+LL FIAEH+ +F+ EY ++LKVNVPGR+ P DA+ R+ +IL H
Sbjct: 1006 PFEALLAFIAEHDQMFTPTEYSNLLKVNVPGRDTPSDAQSRLLEILSH 1053
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 19,974,209
Number of extensions: 786755
Number of successful extensions: 2392
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2384
Number of HSP's successfully gapped: 2
Length of query: 1058
Length of database: 11,106,569
Length adjustment: 109
Effective length of query: 949
Effective length of database: 8,118,225
Effective search space: 7704195525
Effective search space used: 7704195525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 117 (49.7 bits)