BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0310100 Os08g0310100|AK073645
         (295 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64670.1  | chr5:25852535-25853880 REVERSE LENGTH=282          282   2e-76

>AT5G64670.1 | chr5:25852535-25853880 REVERSE LENGTH=282
          Length = 281

 Score =  282 bits (721), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 145/211 (68%), Positives = 155/211 (73%), Gaps = 1/211 (0%)

Query: 71  SLLRLNDLRDNPGARKQXXXXXXXXXXXXXXXXXXXHKGQKARGTARFGFEGGQTPLRRR 130
           SLL LNDLRDN   RK                    HKGQKARGT +FGFEGGQTPLRRR
Sbjct: 62  SLLSLNDLRDNV-PRKLKTRKGRGIGSGKGKTAGRGHKGQKARGTMKFGFEGGQTPLRRR 120

Query: 131 LPRRGFKNRFSLTFQPCGLGKIAKLINAGKIDSSELITMKTLKDTGAIGKQIKDGIRLMG 190
           LP+RGFKN+F L FQP GLGKIAKLINAGKIDS ELITMKTLKD GAIGKQI+DG+RLMG
Sbjct: 121 LPKRGFKNKFKLHFQPVGLGKIAKLINAGKIDSHELITMKTLKDVGAIGKQIEDGVRLMG 180

Query: 191 RGAEEIKWPIHLEVSXXXXXXXXXXXXXXXXXRLVYYNNLGFRALLKPEWFAKKGRLLPK 250
           RGA++IKWP+H EVS                 R VYYN LG RALLKPEWF KKGRLLPK
Sbjct: 181 RGADDIKWPLHFEVSRVTVRAKEVVEAAGGSVRRVYYNKLGLRALLKPEWFEKKGRLLPK 240

Query: 251 AARPPPKQRDKVDSIGRLPAPTKPLPFTPEE 281
           AARPPPKQ+DKVDSIGRLPAP KP+PF   E
Sbjct: 241 AARPPPKQQDKVDSIGRLPAPKKPIPFFAAE 271



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.138    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,076,490
Number of extensions: 186087
Number of successful extensions: 467
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 466
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 197
Effective length of database: 8,419,801
Effective search space: 1658700797
Effective search space used: 1658700797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)