BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0299200 Os08g0299200|J075096F13
         (212 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G11890.1  | chr2:4802999-4803631 FORWARD LENGTH=211            124   3e-29

>AT2G11890.1 | chr2:4802999-4803631 FORWARD LENGTH=211
          Length = 210

 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/215 (40%), Positives = 119/215 (55%), Gaps = 11/215 (5%)

Query: 1   MEVEIKLRLPDAGAHRRLSSFLAPRLRRTDAQRNLFFDX-----XXXXXXXXXXXXXXXX 55
           MEVE+KLRL  A AH RL++ L P   +T  QRN FFD                      
Sbjct: 1   MEVEVKLRLLTAAAHLRLTTLLTPYHLKTLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAA 60

Query: 56  YGLDDRAPSRAVLALKRRPRIDAGVSRVEEVEEPLDPAIALACVDDPASLGGVESPIIRL 115
                 +P R +++LK +P +  G+SRVEE EE ++  I   CV+ PA L  + S +++ 
Sbjct: 61  VSAASPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESPAKLSDIGSRVLKR 120

Query: 116 VSEEYGVGGDAAPFVCLGGFRNTRAVYQLEEGDTLGLVVELDETRFDFGTNYELECETAE 175
           V EEYG   D   FVCLGGF N R VY+       G+ +E+DET++DFG  YE+ECET E
Sbjct: 121 VKEEYGF-NDFLGFVCLGGFENVRNVYEWR-----GVKLEVDETKYDFGNCYEIECETEE 174

Query: 176 PEQAKQVLERLLTVAGVPYEYSRSNKFACFMAGKL 210
           PE+ K ++E  LT   + +  S   KFA F +GKL
Sbjct: 175 PERVKTMIEEFLTEEKIEFSNSDMTKFAVFRSGKL 209



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.139    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,145,245
Number of extensions: 160232
Number of successful extensions: 358
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 118
Effective length of database: 8,529,465
Effective search space: 1006476870
Effective search space used: 1006476870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)