BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0290400 Os08g0290400|AK069705
         (229 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39630.1  | chr4:18397749-18399263 REVERSE LENGTH=234          118   2e-27

>AT4G39630.1 | chr4:18397749-18399263 REVERSE LENGTH=234
          Length = 233

 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 113/230 (49%), Gaps = 11/230 (4%)

Query: 1   MPPRRKKGVXXXXXXXXXXXXXXXLRDRLRWLNDQEYEHRXXXXXXXXXXXXXXXLSRLR 60
           MP R+ K                 + ++     D+E E +               L+ LR
Sbjct: 1   MPKRKAKECVKLTEEDRNDEKRIRIEEKKEDFVDEEVERQIAAIRAIRDVEIEQMLTALR 60

Query: 61  LVESYISKEQQEGCALQYFQENLPNLSVVRNEEQNELELKREDWDKRLIGDHCDDKIFRA 120
           L+ SY ++EQ     L +F+ENLP+LS+ RNEE  E+ELK  D +      + +      
Sbjct: 61  LLRSYFTEEQLHTPVLDFFKENLPDLSISRNEETGEIELKWRDENGDSFAGNENGVDMNY 120

Query: 121 SVSSLPNVGYVQFSG----------DSVRKSFIESMPFNFNDFAWGELPEDQLAGIADAL 170
           S+    ++ +               D+V+ + + +     ++  +    E+Q+    DA 
Sbjct: 121 SILKRLSMRFTDLYSRSSLGGYDLPDNVKANLLGTDNPQLDNLVFQGTSENQMLPGHDAF 180

Query: 171 QTPGAVSTRLSFGMTPKTLRLPKKGEMLLSVRGSPLGVYKEE-NLAAVHE 219
           QTPG    RLSFGMTPKTLRLPK GEM+LSV GSPLGVYKE+ N+ A++E
Sbjct: 181 QTPGVNGQRLSFGMTPKTLRLPKAGEMMLSVHGSPLGVYKEDHNMGAINE 230



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,540,912
Number of extensions: 171468
Number of successful extensions: 451
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 134
Effective length of database: 8,502,049
Effective search space: 1139274566
Effective search space used: 1139274566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)