BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0280200 Os08g0280200|AK069036
(481 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G07740.1 | chr5:2459076-2466580 REVERSE LENGTH=1650 441 e-124
AT5G58160.1 | chr5:23533724-23539465 FORWARD LENGTH=1325 418 e-117
AT2G25050.2 | chr2:10654108-10659383 REVERSE LENGTH=1136 387 e-108
AT1G31810.1 | chr1:11399922-11405761 REVERSE LENGTH=1231 350 1e-96
AT3G50110.1 | chr3:18580777-18583929 REVERSE LENGTH=633 56 5e-08
AT3G19420.1 | chr3:6731824-6735354 FORWARD LENGTH=612 51 2e-06
AT2G25052.1 | chr2:10660074-10660226 REVERSE LENGTH=51 49 5e-06
>AT5G07740.1 | chr5:2459076-2466580 REVERSE LENGTH=1650
Length = 1649
Score = 441 bits (1135), Expect = e-124, Method: Composition-based stats.
Identities = 193/287 (67%), Positives = 238/287 (82%), Gaps = 1/287 (0%)
Query: 1 MALFRKFFYRKPPDGLLEITERVYVFDSCFTTDVFNDDKYQDYIGDIVAQLQCHFADASF 60
MALFR+FFY+KPPD LLEI+ERVYVFD CF++DV +D+Y+ Y+G IVAQLQ HF +ASF
Sbjct: 1 MALFRRFFYKKPPDRLLEISERVYVFDCCFSSDVMGEDEYKVYLGGIVAQLQDHFPEASF 60
Query: 61 MVFNFREGESQSLLANILSSYEMVVMDYPRQYEGCPLVTIEMIHHFLRSGESWLSLS-QQ 119
MVFNFREGE +S ++++LS Y+M VMDYPRQYE CPL+ +EMIHHFLRS ESWLSL QQ
Sbjct: 61 MVFNFREGEQRSQISDVLSQYDMTVMDYPRQYESCPLLPLEMIHHFLRSSESWLSLEGQQ 120
Query: 120 NVLIMHCERGGWAVLAFMLAGLLLYRKQYIGEQRTLEMIYRQAPRELIQLLSPLNPIPSQ 179
NVL+MHCERGGW VLAFML+GLLLYRKQY GEQ+TLEM+++QAP+EL+ LLSPLNP PSQ
Sbjct: 121 NVLLMHCERGGWPVLAFMLSGLLLYRKQYHGEQKTLEMVHKQAPKELLHLLSPLNPQPSQ 180
Query: 180 IRYLHYISRRNVSAVWPPGDRALTLDCVILRNIPGFNGEGGCRPIFRIYGKDPLLATSNT 239
+RYL YISRRN+ + WPP D L LDC+ILR++P F G+ GCRPI R+YG+DP T+ +
Sbjct: 181 LRYLQYISRRNLGSDWPPSDTPLLLDCLILRDLPHFEGKKGCRPILRVYGQDPKARTNRS 240
Query: 240 PKVLFSTPKRSKYVRLYKKVDCELIKIDIHCHIQGDVVLECISLDAD 286
+LFST K K+ RLY++ +C L+K+DI C +QGDVVLECI L D
Sbjct: 241 SILLFSTLKTKKHTRLYQQEECILVKLDIQCRVQGDVVLECIHLHDD 287
>AT5G58160.1 | chr5:23533724-23539465 FORWARD LENGTH=1325
Length = 1324
Score = 418 bits (1075), Expect = e-117, Method: Compositional matrix adjust.
Identities = 179/286 (62%), Positives = 236/286 (82%)
Query: 1 MALFRKFFYRKPPDGLLEITERVYVFDSCFTTDVFNDDKYQDYIGDIVAQLQCHFADASF 60
MALFRK FYRKPPDGLLEI +RV+VFD CF+TD + ++ Y+ Y+ +V QLQ HF +AS
Sbjct: 1 MALFRKLFYRKPPDGLLEICDRVFVFDCCFSTDSWEEENYKVYMAGVVNQLQEHFPEASS 60
Query: 61 MVFNFREGESQSLLANILSSYEMVVMDYPRQYEGCPLVTIEMIHHFLRSGESWLSLSQQN 120
+VFNFRE ++S++A++LS + + +MDYPR YEGC L+ +E++HHFLRS ESWLSL N
Sbjct: 61 LVFNFREVGTRSVMADVLSEHGLTIMDYPRHYEGCSLLPVEVMHHFLRSSESWLSLGPNN 120
Query: 121 VLIMHCERGGWAVLAFMLAGLLLYRKQYIGEQRTLEMIYRQAPRELIQLLSPLNPIPSQI 180
+L+MHCE G W VLAFMLA LL+YRKQY GE +TL+MIY+QAPREL++L SPLNPIPSQ+
Sbjct: 121 LLLMHCESGAWPVLAFMLAALLIYRKQYSGESKTLDMIYKQAPRELLRLFSPLNPIPSQL 180
Query: 181 RYLHYISRRNVSAVWPPGDRALTLDCVILRNIPGFNGEGGCRPIFRIYGKDPLLATSNTP 240
RYL Y+SRRN+ + WPP DRALT+DCVILR IP +G+GG RP+FRIYG+DP P
Sbjct: 181 RYLQYVSRRNLVSEWPPLDRALTMDCVILRFIPDVSGQGGFRPMFRIYGQDPFFVDDKKP 240
Query: 241 KVLFSTPKRSKYVRLYKKVDCELIKIDIHCHIQGDVVLECISLDAD 286
K+L++TPK+ K++R+YK+ +CEL+KIDI+CH+QGD+V+EC+SL+ D
Sbjct: 241 KLLYTTPKKGKHLRVYKQAECELVKIDINCHVQGDIVIECLSLNDD 286
>AT2G25050.2 | chr2:10654108-10659383 REVERSE LENGTH=1136
Length = 1135
Score = 387 bits (994), Expect = e-108, Method: Compositional matrix adjust.
Identities = 171/253 (67%), Positives = 211/253 (83%)
Query: 34 VFNDDKYQDYIGDIVAQLQCHFADASFMVFNFREGESQSLLANILSSYEMVVMDYPRQYE 93
+ D+ Y+ Y+ I++QL+ F ASFMVFNFR+G+S+S + ++L+ Y+M +MDYPR YE
Sbjct: 1 MLEDEDYRVYVSRIMSQLREQFPGASFMVFNFRDGDSRSRMESVLTEYDMTIMDYPRHYE 60
Query: 94 GCPLVTIEMIHHFLRSGESWLSLSQQNVLIMHCERGGWAVLAFMLAGLLLYRKQYIGEQR 153
GCPL+T+E +HHFL+S ESWL LSQQN+L+ HCE GGW LAFMLA LLLYRKQ+ GE R
Sbjct: 61 GCPLLTMETVHHFLKSAESWLLLSQQNILLSHCELGGWPTLAFMLASLLLYRKQFSGEHR 120
Query: 154 TLEMIYRQAPRELIQLLSPLNPIPSQIRYLHYISRRNVSAVWPPGDRALTLDCVILRNIP 213
TLEMIY+QAPREL+QL+SPLNP+PSQ+R+L YISRRNV + WPP D+ALTLDCV LR IP
Sbjct: 121 TLEMIYKQAPRELLQLMSPLNPLPSQLRFLQYISRRNVGSQWPPLDQALTLDCVNLRLIP 180
Query: 214 GFNGEGGCRPIFRIYGKDPLLATSNTPKVLFSTPKRSKYVRLYKKVDCELIKIDIHCHIQ 273
F+GEGGCRPIFRIYG+DP +A+ T KVLFS PKRSK VR YK+ DCEL+KIDI+CHI
Sbjct: 181 DFDGEGGCRPIFRIYGQDPFMASDRTSKVLFSMPKRSKAVRQYKQADCELVKIDINCHIL 240
Query: 274 GDVVLECISLDAD 286
GDVVLECI+L +D
Sbjct: 241 GDVVLECITLGSD 253
>AT1G31810.1 | chr1:11399922-11405761 REVERSE LENGTH=1231
Length = 1230
Score = 350 bits (898), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 149/287 (51%), Positives = 222/287 (77%), Gaps = 1/287 (0%)
Query: 1 MALFRKFFYRKPPDGLLEITERVYVFDSCFTTDVFNDDKYQDYIGDIVAQLQCHFADASF 60
M+L +FFY++PPDGLLE +RVYVFDSCF T+V D YQ ++ +++ L F ++SF
Sbjct: 1 MSLLSRFFYKRPPDGLLEFADRVYVFDSCFCTEVLADSLYQIFLHEVINDLHEEFPESSF 60
Query: 61 MVFNFREGESQSLLANILSSYEMVVMDYPRQYEGCPLVTIEMIHHFLRSGESWLSL-SQQ 119
+ FNFREGE +S+ A L Y++ V++YPRQYEGCP++ + +I HFLR ESWL+ ++Q
Sbjct: 61 LAFNFREGEKKSVFAETLCEYDVTVLEYPRQYEGCPMLPLSLIQHFLRVCESWLARGNRQ 120
Query: 120 NVLIMHCERGGWAVLAFMLAGLLLYRKQYIGEQRTLEMIYRQAPRELIQLLSPLNPIPSQ 179
+V+++HCERGGW +LAF+LA L++RK + GE+RTLE+++R+AP+ L+QLLSPLNP PSQ
Sbjct: 121 DVILLHCERGGWPLLAFILASFLIFRKVHSGERRTLEIVHREAPKGLLQLLSPLNPFPSQ 180
Query: 180 IRYLHYISRRNVSAVWPPGDRALTLDCVILRNIPGFNGEGGCRPIFRIYGKDPLLATSNT 239
+RYL Y++RRN+++ WPP +RAL+LDCVI+R IP F+ + GCRPI RI+G++ + +
Sbjct: 181 LRYLQYVARRNINSEWPPPERALSLDCVIIRGIPNFDSQHGCRPIIRIFGRNYSSKSGLS 240
Query: 240 PKVLFSTPKRSKYVRLYKKVDCELIKIDIHCHIQGDVVLECISLDAD 286
++++S + K +R Y++ +C++IKIDI C +QGDVVLEC+ +D D
Sbjct: 241 TEMVYSMSDKKKPLRHYRQAECDVIKIDIQCWVQGDVVLECVHMDLD 287
>AT3G50110.1 | chr3:18580777-18583929 REVERSE LENGTH=633
Length = 632
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 95/218 (43%), Gaps = 31/218 (14%)
Query: 40 YQDYIGDIVAQLQCHFADASFMVFNFREGESQSLLANILSSYEMVVMDYPRQYEGCPLVT 99
Y++++ +++ + H D + V+N S+ L S +E V +P CP
Sbjct: 229 YRNHMEEVIKFFETHHKD-KYKVYNLC---SERLYD--ASRFEGKVASFPFDDHNCP--P 280
Query: 100 IEMIHHFLRSGESWLSLSQQNVLIMHCERGGWAVLAFMLAGLLLYRKQYIGEQRTLEMIY 159
I++I F +S +WL QNV+++HC + G A M+ LLLY K + + ++
Sbjct: 281 IQLIPSFCQSAYTWLKEDIQNVVVVHC-KAGMARTGLMICCLLLYLKFFPTAEEAIDYYN 339
Query: 160 RQAPRELIQLLSPLNPIPSQIRYLHYISR--RNVSAVWPPGDRALTLDCVILRNIPGFNG 217
++ + L+ +PSQIRY+ Y R PP R + LR
Sbjct: 340 QKRCLDGKALV-----LPSQIRYVKYYERVQNQFDGKVPPERRCM------LR------- 381
Query: 218 EGGCRPIFRIYGKDPLLATSNTPKVLFSTPKRSKYVRL 255
G R I Y P + SN +LFST K K L
Sbjct: 382 --GFRLINCPYWIRPAITISNHTDILFSTKKHQKTKDL 417
>AT3G19420.1 | chr3:6731824-6735354 FORWARD LENGTH=612
Length = 611
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 78 LSSYEMVVMDYPRQYEGCPLVTIEMIHHFLRSGESWLSLSQQNVLIMHCERGGWAVLAFM 137
+S +E V +P CP I ++ F +S SWL +NV+++HC + G A M
Sbjct: 217 VSLFEGKVASFPFDDHNCP--PIHLVTSFCQSAYSWLKEDIENVVVVHC-KAGMARTGLM 273
Query: 138 LAGLLLYRKQYIGEQRTLEMIYRQAPRELIQLLSPLNPIPSQIRYLHYISR 188
+ LLLY K + + ++ ++ + L+ +PSQIRY+ Y R
Sbjct: 274 ICSLLLYLKFFPTAEECMDFYNQKRCVDGKGLV-----LPSQIRYVKYFER 319
>AT2G25052.1 | chr2:10660074-10660226 REVERSE LENGTH=51
Length = 50
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/24 (87%), Positives = 24/24 (100%)
Query: 1 MALFRKFFYRKPPDGLLEITERVY 24
MALFRKFF+RKPP+GLLEI+ERVY
Sbjct: 1 MALFRKFFHRKPPEGLLEISERVY 24
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.329 0.143 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,027,551
Number of extensions: 318096
Number of successful extensions: 811
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 810
Number of HSP's successfully gapped: 7
Length of query: 481
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 379
Effective length of database: 8,310,137
Effective search space: 3149541923
Effective search space used: 3149541923
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 114 (48.5 bits)