BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0269000 Os08g0269000|AK119946
(272 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G30830.1 | chr4:15015506-15016683 REVERSE LENGTH=364 56 2e-08
AT5G57830.1 | chr5:23429406-23430860 REVERSE LENGTH=388 54 1e-07
AT3G54740.2 | chr3:20262949-20264466 FORWARD LENGTH=439 53 2e-07
AT5G06560.1 | chr5:2003678-2005543 REVERSE LENGTH=519 51 6e-07
AT1G74830.1 | chr1:28113469-28115193 REVERSE LENGTH=543 48 5e-06
>AT4G30830.1 | chr4:15015506-15016683 REVERSE LENGTH=364
Length = 363
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 44/58 (75%)
Query: 41 SGADEALAMIVRLQAEKAAERMEAEQFRRVAEERIQHDGDSLAFLKAVVFHQEMEISS 98
+ A+EA++MI+RLQ EKA MEA+Q++R+ EE++ H S A L+ V++ +E+E+++
Sbjct: 45 TSANEAMSMILRLQGEKAELAMEADQYKRMVEEQMSHAEMSFALLEDVIYQKEIEVTA 102
>AT5G57830.1 | chr5:23429406-23430860 REVERSE LENGTH=388
Length = 387
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 49 MIVRLQAEKAAERMEAEQFRRVAEERIQHDGDSLAFLKAVVFHQEMEISS 98
MI+RLQ EKAA MEA Q++R+AEE++ H SL + +++ +EMEI+S
Sbjct: 54 MILRLQGEKAALEMEASQYKRMAEEKMCHAETSLVLFEDLIYQKEMEIAS 103
>AT3G54740.2 | chr3:20262949-20264466 FORWARD LENGTH=439
Length = 438
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 40/56 (71%)
Query: 41 SGADEALAMIVRLQAEKAAERMEAEQFRRVAEERIQHDGDSLAFLKAVVFHQEMEI 96
S A+E ++MI+RLQ EKA +MEA QF+ A+E++ HD + L+ L+ +++ +E I
Sbjct: 101 SAANETMSMILRLQREKAEIQMEARQFKMFAQEKMTHDQEKLSVLENLLYEKEQAI 156
>AT5G06560.1 | chr5:2003678-2005543 REVERSE LENGTH=519
Length = 518
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 39/56 (69%)
Query: 41 SGADEALAMIVRLQAEKAAERMEAEQFRRVAEERIQHDGDSLAFLKAVVFHQEMEI 96
+ A EA++MI+RLQ +KA +ME QF+R AEE+++HD L L+ +++ +E I
Sbjct: 101 TAASEAMSMILRLQRDKAELQMELRQFKRFAEEKMEHDQQELLDLEDLIYKREQTI 156
>AT1G74830.1 | chr1:28113469-28115193 REVERSE LENGTH=543
Length = 542
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 34/41 (82%)
Query: 42 GADEALAMIVRLQAEKAAERMEAEQFRRVAEERIQHDGDSL 82
A+EA+AMI RLQAEKAA +MEA Q++R+ +E+ ++D ++L
Sbjct: 333 AANEAMAMITRLQAEKAAVQMEALQYQRMMDEQAEYDQEAL 373
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.129 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,359,880
Number of extensions: 83705
Number of successful extensions: 287
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 10
Length of query: 272
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 175
Effective length of database: 8,447,217
Effective search space: 1478262975
Effective search space used: 1478262975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)