BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0265500 Os08g0265500|AK100508
(336 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G28070.2 | chr4:13946009-13948462 FORWARD LENGTH=474 496 e-141
AT4G30490.1 | chr4:14899226-14901883 REVERSE LENGTH=498 493 e-140
AT2G25530.1 | chr2:10863059-10866597 FORWARD LENGTH=656 146 1e-35
>AT4G28070.2 | chr4:13946009-13948462 FORWARD LENGTH=474
Length = 473
Score = 496 bits (1277), Expect = e-141, Method: Compositional matrix adjust.
Identities = 236/311 (75%), Positives = 273/311 (87%), Gaps = 2/311 (0%)
Query: 14 PANWRKKRIHFHDFMLNVHSRLQMHKGVSDPLEVVAAEISDEAIILCLDEFMVTDVADAM 73
PA+WR +RIHFH+FML+VHSRLQ HKG+ DPLEVV EI+DEAI+LCLDEFMV DVADA+
Sbjct: 158 PASWRTQRIHFHNFMLSVHSRLQKHKGLEDPLEVVGLEIADEAILLCLDEFMVNDVADAL 217
Query: 74 ILNRLFRHLFSKGVILVSTSNRAPDQLYEGGLQRDLFLPFIDTLKERCIAHPIGSAVDYR 133
ILNRLFRHLF+ G+ILV+TSNRAPD LYEGGLQRDLFLPFI TLKERC+ IGS+VDYR
Sbjct: 218 ILNRLFRHLFNNGIILVATSNRAPDNLYEGGLQRDLFLPFISTLKERCVVREIGSSVDYR 277
Query: 134 QLGSAEQGFYFIGKQYS-LLKQKLQTLIGDEEPRPQTVEVVMGRQLQVPLGANGIAYFPF 192
+L SAE+GFYFIGK S LLKQK Q L+GD+ PQ VEVVMGR+LQVPL A+G AYF F
Sbjct: 278 KLTSAEEGFYFIGKDISGLLKQKFQLLVGDQPAGPQVVEVVMGRKLQVPLAADGCAYFLF 337
Query: 193 EDLCDRPLGAADYFGLFKKFHTLALDGIPKFGSQNRTAAYRFVTLVDVMYENKARLLCTA 252
E+LCDRPLGAADY GLFKKFHTLAL+G+P FG NRTAAYRFVTLVDVMYENKARLLCTA
Sbjct: 338 EELCDRPLGAADYLGLFKKFHTLALEGVPFFGLHNRTAAYRFVTLVDVMYENKARLLCTA 397
Query: 253 DAAPIELFENIVTVAEARKISPR-SSRSQKTDDPDLCVDNELGFAKDRTISRLTEINSRE 311
+ +P+EL E IVT+++A++I+PR SSRS+K+DDPDLCVDNELGFAKDRTISRLTE+NS+E
Sbjct: 398 EGSPLELLERIVTISDAQQIAPRTSSRSRKSDDPDLCVDNELGFAKDRTISRLTEMNSKE 457
Query: 312 YLEDFEAKLRQ 322
YLE L++
Sbjct: 458 YLEQHSRMLQE 468
>AT4G30490.1 | chr4:14899226-14901883 REVERSE LENGTH=498
Length = 497
Score = 493 bits (1270), Expect = e-140, Method: Compositional matrix adjust.
Identities = 238/304 (78%), Positives = 266/304 (87%), Gaps = 3/304 (0%)
Query: 14 PANWRKKRIHFHDFMLNVHSRLQMHKGVSDPLEVVAAEISDEAIILCLDEFMVTDVADAM 73
P W+K+RIHFHDFML+VHSRLQ HKG+SDPLEVVA EI+ +AI+LCLDEFMVTDVADA+
Sbjct: 186 PCTWKKQRIHFHDFMLSVHSRLQKHKGLSDPLEVVAQEIAHDAILLCLDEFMVTDVADAL 245
Query: 74 ILNRLFRHLFSKGVILVSTSNRAPDQLYEGGLQRDLFLPFIDTLKERCIAHPIGSAVDYR 133
ILNRLF HLFS GVILV+TSNR PD+LYEGGLQRDLFLPFI +LKER + H IGSAVDYR
Sbjct: 246 ILNRLFGHLFSNGVILVATSNRNPDKLYEGGLQRDLFLPFISSLKERSVVHEIGSAVDYR 305
Query: 134 QLGSAEQGFYFIGKQYS-LLKQKLQTLIGDE-EPRPQTVEVVMGRQLQVPLGANGIAYFP 191
+L SAEQGFYFIGK S LLKQK + LIGD RPQ VEVVMGR+LQ+PLGANG AYFP
Sbjct: 306 KLTSAEQGFYFIGKDLSTLLKQKFRQLIGDNVVARPQVVEVVMGRKLQIPLGANGCAYFP 365
Query: 192 FEDLCDRPLGAADYFGLFKKFHTLALDGIPKFGSQNRTAAYRFVTLVDVMYENKARLLCT 251
FE+LCDRPLGAADYFGLFKKFHTLALD IP FG NRTAAYRFVTLVDVMYEN+ARLLCT
Sbjct: 366 FEELCDRPLGAADYFGLFKKFHTLALDEIPVFGLHNRTAAYRFVTLVDVMYENRARLLCT 425
Query: 252 ADAAPIELFENIVTVAEARKISPR-SSRSQKTDDPDLCVDNELGFAKDRTISRLTEINSR 310
A+A P EL E I+T++EA+ + PR SSRS+K D +LCVDNELGFAKDRTISRLTE+NS+
Sbjct: 426 AEANPQELLEKIITISEAKSMGPRTSSRSRKNDVTELCVDNELGFAKDRTISRLTEMNSK 485
Query: 311 EYLE 314
EYLE
Sbjct: 486 EYLE 489
>AT2G25530.1 | chr2:10863059-10866597 FORWARD LENGTH=656
Length = 655
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 150/300 (50%), Gaps = 59/300 (19%)
Query: 19 KKRIHFHDFMLNVHSRLQMHK-----GVSDPL------------------EVVAAE---- 51
++R HFH+ ML ++ QMHK G P+ E +A E
Sbjct: 272 RQRFHFHEAMLKINE--QMHKYWKENGAEKPMQYSISSWIMNLPVDEKVKEWLAGEEFYK 329
Query: 52 -----------ISDE-----------AIILCLDEFMVTDVADAMILNRLFRHLFSKGVIL 89
++D+ A ILC DE DV + L+ + L + G +L
Sbjct: 330 QQLQMKHILPAVADKFLVDQQSSKKGASILCFDEIQTVDVFAIVALSGIMSRLLTTGTVL 389
Query: 90 VSTSNRAPDQLYEGGLQRDLFLPFIDTLKERCIAHPIGSAVDYRQLG---SAEQGFYFIG 146
V+TSNRAP +L + G+Q+++F FI L++ C IGS VDYR++ SAE Y
Sbjct: 390 VATSNRAPRELNQDGMQKEIFDKFISKLEKHCEIISIGSEVDYRRVAAKNSAENVHYLWP 449
Query: 147 KQYSLLKQ--KLQTLIGDE---EPRPQTVEVVMGRQLQVPLGANGIAYFPFEDLCDRPLG 201
++L++ K+ + D+ E T+ V+ GR ++VP +G+A F FE LC RP+G
Sbjct: 450 LNDAVLEEFEKMWRQVTDQYGGEITSATLPVMFGRTVEVPESCSGVARFTFEYLCGRPVG 509
Query: 202 AADYFGLFKKFHTLALDGIPKFGSQNRTAAYRFVTLVDVMYENKARLLCTADAAPIELFE 261
AADY + K +HT+ + IP + R A RF+TLVD +Y + L+ +A+ A ELF+
Sbjct: 510 AADYIAVAKNYHTIFISDIPAMSMEIRDKARRFITLVDELYNHHCCLVSSAETAIDELFQ 569
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.140 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,748,826
Number of extensions: 271253
Number of successful extensions: 542
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 536
Number of HSP's successfully gapped: 3
Length of query: 336
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,392,385
Effective search space: 1988995245
Effective search space used: 1988995245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)