BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0250700 Os08g0250700|AK109193
(210 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G18990.1 | chr2:8238851-8239932 REVERSE LENGTH=212 283 5e-77
AT3G25580.1 | chr3:9292557-9294148 FORWARD LENGTH=211 278 2e-75
AT5G66410.1 | chr5:26519909-26521459 FORWARD LENGTH=231 120 5e-28
AT3G50960.1 | chr3:18938891-18940226 REVERSE LENGTH=231 119 9e-28
>AT2G18990.1 | chr2:8238851-8239932 REVERSE LENGTH=212
Length = 211
Score = 283 bits (724), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 137/208 (65%), Positives = 170/208 (81%), Gaps = 4/208 (1%)
Query: 6 VGQILEKQVLSVAKAVEDKLDEQIAALDRLDPDDIEALRERRILQMXXXXXXXXXXXXLG 65
+ +ILEKQVL+VAKA+EDK+D++IA+L++LD DD+E LRERR+ QM LG
Sbjct: 5 IQEILEKQVLTVAKAMEDKIDDEIASLEKLDEDDLEVLRERRLKQMKKMAEKKKRWISLG 64
Query: 66 HGEYGEV-PEKEFFAAAKASDRLVCHFYRDNWPCKVMDKHLSILAKQHVETRFVKVHAEK 124
HGEY E+ EK+FF+ KAS+R+VCHFYR+NWPCKVMDKH+SILAKQH+ETRFVK+ AEK
Sbjct: 65 HGEYSEIHSEKDFFSVVKASERVVCHFYRENWPCKVMDKHMSILAKQHIETRFVKIQAEK 124
Query: 125 APFLTEKLRIVVLPTLALVKNTKVEDYVVGFDELGGKDDFSTEDLEERLAKAQVIFLDGE 184
+PFL E+L+IVVLPTLAL+KNTKV+DYVVGF+ELGGKDDFSTEDLEER+A+AQVI DGE
Sbjct: 125 SPFLAERLKIVVLPTLALIKNTKVDDYVVGFNELGGKDDFSTEDLEERIARAQVIHYDGE 184
Query: 185 GPAHASKQAT--KRSVRQSDTGNSSDSE 210
+ K T +R+VRQS + SDSE
Sbjct: 185 SSSLKPKSTTQVRRNVRQS-ARSDSDSE 211
>AT3G25580.1 | chr3:9292557-9294148 FORWARD LENGTH=211
Length = 210
Score = 278 bits (710), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 132/207 (63%), Positives = 168/207 (81%), Gaps = 3/207 (1%)
Query: 6 VGQILEKQVLSVAKAVEDKLDEQIAALDRLDPDDIEALRERRILQMXXXXXXXXXXXXLG 65
+ +I+EKQVL+VAKA+EDK+D++IA+L++LD DD+E LRERR+ QM +G
Sbjct: 5 IQEIIEKQVLTVAKAMEDKIDDEIASLEKLDEDDLEVLRERRLKQMKKMAEKKKRWMSIG 64
Query: 66 HGEYGEV-PEKEFFAAAKASDRLVCHFYRDNWPCKVMDKHLSILAKQHVETRFVKVHAEK 124
HGEY E+ EK+FF+ K+S+R+VCHFYR+NWPCKVMDKH+SILAKQH+ETRFVK+ AEK
Sbjct: 65 HGEYSEIHSEKDFFSVVKSSERVVCHFYRENWPCKVMDKHMSILAKQHIETRFVKIQAEK 124
Query: 125 APFLTEKLRIVVLPTLALVKNTKVEDYVVGFDELGGKDDFSTEDLEERLAKAQVIFLDGE 184
+PFL E+L+IVVLPTLAL+KNTKV+DYVVGF+ELGGKDDFSTEDLEER+A+AQVI +GE
Sbjct: 125 SPFLAERLKIVVLPTLALIKNTKVDDYVVGFNELGGKDDFSTEDLEERIARAQVIHYEGE 184
Query: 185 GP-AHASKQATKRSVRQSDTGNSSDSE 210
S +R+VRQS + SDSE
Sbjct: 185 SSLKQKSTTQVRRNVRQS-ARSDSDSE 210
>AT5G66410.1 | chr5:26519909-26521459 FORWARD LENGTH=231
Length = 230
Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 98/171 (57%), Gaps = 2/171 (1%)
Query: 11 EKQVLSVAKAVEDK-LDEQIAALDRLDPDDIEALRERRILQMXXXXXXXXXXXXLGHGEY 69
+K+VL+ KA + ++E++ + +D ++E L RI + GHGEY
Sbjct: 27 KKEVLANEKAQGSRPVNEEVDLDELMDDPELEKLHADRIAALRREVEKREAFKRQGHGEY 86
Query: 70 GEVPEKEFFAAAKASDRLVCHFY-RDNWPCKVMDKHLSILAKQHVETRFVKVHAEKAPFL 128
EV E +F S++++CHFY ++ + CK+MDKHL LA +HV+T+F+K+ AE APF
Sbjct: 87 REVSEGDFLGEVTRSEKVICHFYHKEFYRCKIMDKHLKTLAPRHVDTKFIKMDAENAPFF 146
Query: 129 TEKLRIVVLPTLALVKNTKVEDYVVGFDELGGKDDFSTEDLEERLAKAQVI 179
KL I LP + L D +VGF +LG KDDFST LE L K ++
Sbjct: 147 VTKLAIKTLPCVILFSKGIAMDRLVGFQDLGAKDDFSTTKLENLLVKKGML 197
>AT3G50960.1 | chr3:18938891-18940226 REVERSE LENGTH=231
Length = 230
Score = 119 bits (299), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 94/162 (58%), Gaps = 2/162 (1%)
Query: 11 EKQVLSVAKAV-EDKLDEQIAALDRLDPDDIEALRERRILQMXXXXXXXXXXXXLGHGEY 69
+K+VL+ KA + ++E++ + +D ++E L RI + GHGEY
Sbjct: 27 QKEVLANEKAQGSNPVNEEVDLDELMDDPELERLHADRIAALKREVEKRESFKRQGHGEY 86
Query: 70 GEVPEKEFFAAAKASDRLVCHFY-RDNWPCKVMDKHLSILAKQHVETRFVKVHAEKAPFL 128
EV E +F S++++CHFY ++ + CK+MDKHL LA +HV+T+F+KV AE APF
Sbjct: 87 REVSEGDFLGEVTRSEKVICHFYHKEFYRCKIMDKHLKTLAPRHVDTKFIKVDAENAPFF 146
Query: 129 TEKLRIVVLPTLALVKNTKVEDYVVGFDELGGKDDFSTEDLE 170
KL I LP + L D +VGF +LG KDDF+T LE
Sbjct: 147 VTKLAIKTLPCVVLFSKGVAMDRLVGFQDLGTKDDFTTNKLE 188
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,035,628
Number of extensions: 152210
Number of successful extensions: 446
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 5
Length of query: 210
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 116
Effective length of database: 8,529,465
Effective search space: 989417940
Effective search space used: 989417940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)