BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0243900 Os08g0243900|AK121452
         (641 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57460.1  | chr5:23275321-23277261 FORWARD LENGTH=647          649   0.0  

>AT5G57460.1 | chr5:23275321-23277261 FORWARD LENGTH=647
          Length = 646

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/657 (52%), Positives = 438/657 (66%), Gaps = 29/657 (4%)

Query: 1   MACLAISLQPVNGPDILLQTRSWFPVSRALAAVSSFRLARLHLARGKQQQLXXXXXXXXX 60
           M+CLA++LQP NG DILLQTR WFP +RAL A+S FR  R  LA  KQQ           
Sbjct: 1   MSCLALALQPANGSDILLQTREWFPPARALIALSYFRQMRQALASSKQQHQQQSNQKQNQ 60

Query: 61  X----------------XTLEAIGDDPLAAGSGQLVVGVESQYRVVYRLVNSIYVLGVTT 104
                               E +GDDPLAA +GQ++VGVES+YRVVYRLVNSIY+LGVT 
Sbjct: 61  ASSSSSSSSSVADPDDATAAEFVGDDPLAASNGQVIVGVESKYRVVYRLVNSIYILGVTV 120

Query: 105 SSDHASPAVHAFXXXXXXXXXXXXXXXXCRGVDVTPEKVHRKYPEVYLALDLVLHGVGSV 164
           + DH + +++ F                CRGV+VTPEK+ RKY EVY+ALD+VL GV ++
Sbjct: 121 A-DHDN-SINVFECIHIVNQAVSVIVTACRGVEVTPEKLGRKYAEVYMALDIVLRGVSNI 178

Query: 165 RLSQILATIHGDNLARMVNSSPDAEAKARGADPWPAVEHLAHDRHAARDGFTGASFELPQ 224
           RL+ +L  +HGD +A+MV+S+ D E K RGAD W AVE  A +  A+ + F+ A FELP 
Sbjct: 179 RLAAMLGAMHGDGIAKMVHSALDTENKIRGADSWMAVESHAAEHQASVNAFSNARFELPP 238

Query: 225 ETLAAGDEFSASNIXXXXXXXXXXXXXXXXXXXXXKDPFAASELVNNSEEALVGGFKKNK 284
           ET+AAGDEF+AS                       KDPFAASE +N  +E LVGGFKK K
Sbjct: 239 ETVAAGDEFAAS----LAPVVPESEQLKEEPEPENKDPFAASETINKEKE-LVGGFKKTK 293

Query: 285 ETXXXXXXXXXXXXGLEVTTLPPAEATKPTFIGVEGFEGDYGGIEFGNEEASLAEAFEGF 344
           +             GLEVTTLPPAEAT+ T I VEGFEG YGGIEF NE+A++ E FE F
Sbjct: 294 DPSSTDLTLALA--GLEVTTLPPAEATQSTHINVEGFEGQYGGIEFSNEQATIGETFESF 351

Query: 345 NAPFGGGLDASEFVTTTKKDHKDKSITGLELLATSAGQGPNAPGGTPLENLLVTKSTEMT 404
           +  +GGGLD SEF+   KK  K + + GLELL TS  +      G  ++NL+  K  EM 
Sbjct: 352 SDAWGGGLDPSEFMGP-KKIQKKEGLGGLELLHTSDPKAVEGKDGVNIDNLV--KKPEMK 408

Query: 405 APELYIVEEVNAEFKESILARVGLKGTIFLRTLPPKKAAG-KETEFSFRLEGTSGMKKAA 463
            PE+YI EE+  EF+ES+LARVG+ G I+L+T+PPK +   KETEFSFR+EGT+ +K+ A
Sbjct: 409 GPEMYISEEIRTEFRESLLARVGVMGVIYLKTMPPKGSGEEKETEFSFRVEGTTAVKRFA 468

Query: 464 LQSTVLSNLENGMFHVRTPSKEEPIPIMKYSFLPKHSPLPLRMRLVKRHSGTLLSVMIQY 523
           +QS+ +S+L NG+FHVRT   EEPIPI+KYS  PK +PLPLR+R+VKR SGTLLS+MIQY
Sbjct: 469 MQSSRISSLGNGLFHVRTAPSEEPIPILKYSLQPKLTPLPLRVRMVKRISGTLLSLMIQY 528

Query: 524 ASNPMLPQPLSNVTFIVKLPVDPTLLNVSPKAVLNRAERELRWHIPDIPLKGPAGRLRAR 583
            SNP LPQPL NV FI+KLPVDPTLL VSPKA+LNR +REL+W IP+IPL G  GRLRAR
Sbjct: 529 VSNPDLPQPLKNVDFILKLPVDPTLLKVSPKAILNRTDRELKWQIPEIPLNGSPGRLRAR 588

Query: 584 MPVDQDSKDGELEVVGMVKFAYQGPFTLSGIKLCPATDGTAQFNEAGHTFSSGSYLC 640
           MP+D D+ + E +++  VKF+ QG  +LSGI L  A +G   F E  H + +G Y+C
Sbjct: 589 MPIDSDNSEEEPDIICYVKFSVQGNTSLSGISLRAAAEGNTDFFEVDHRYETGVYMC 645



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,514,074
Number of extensions: 495729
Number of successful extensions: 996
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 987
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 536
Effective length of database: 8,227,889
Effective search space: 4410148504
Effective search space used: 4410148504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 115 (48.9 bits)