BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0243600 Os08g0243600|AK101443
(240 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25840.1 | chr4:13139026-13140719 FORWARD LENGTH=299 339 9e-94
AT5G57440.1 | chr5:23271518-23272900 REVERSE LENGTH=241 327 3e-90
AT4G21470.1 | chr4:11431284-11433197 FORWARD LENGTH=380 142 2e-34
AT4G39970.1 | chr4:18536678-18538429 REVERSE LENGTH=317 66 2e-11
AT1G56500.1 | chr1:21159775-21167092 FORWARD LENGTH=1056 60 7e-10
AT2G38740.1 | chr2:16194639-16195995 REVERSE LENGTH=245 47 6e-06
>AT4G25840.1 | chr4:13139026-13140719 FORWARD LENGTH=299
Length = 298
Score = 339 bits (869), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 160/230 (69%), Positives = 187/230 (81%), Gaps = 1/230 (0%)
Query: 12 APRAAVSHVIFDMDGLLLDTEGFYTEVQEKILARYGKVFDWSLKAKMMGKKATESARIFV 71
A R +++HVIFDMDGLLLDTE FYTEVQEKILARY K FDWSLKAKMMG+KA E+AR+FV
Sbjct: 66 AGRGSITHVIFDMDGLLLDTEKFYTEVQEKILARYNKTFDWSLKAKMMGRKAIEAARLFV 125
Query: 72 DECGLDGLLTPEQFLEERESMLQELFPSCAVLPGVLRLIHHLHANGVPMAVATGSHKRHF 131
DE G+ L+ E F+ ERESMLQ+LFP+ ++PG RL+ HLH G+P+ +ATG+H RHF
Sbjct: 126 DESGISDSLSAEDFIVERESMLQDLFPTSDLMPGASRLLRHLHGKGIPICIATGTHTRHF 185
Query: 132 ALKTQNHKEMFTLMHHVVMGDDPDVKTGKPSPDIFLAAMRRFE-GNIEPSNCLVFEDAPS 190
LKTQ H+E+F+LMHHVV GDDP+VK GKP+PD FLAA RRFE G ++P LVFEDAPS
Sbjct: 186 DLKTQRHRELFSLMHHVVRGDDPEVKEGKPAPDGFLAASRRFEDGPVDPRKVLVFEDAPS 245
Query: 191 GVAAAKNAGMYAVMVPDSRLDVSYHKGADQVLSSLLDFKPGEWGLPPFTD 240
GV AAKNAGM +MVPDSRLD SY ADQVL+SLLDFKP EWGLP F D
Sbjct: 246 GVQAAKNAGMNVIMVPDSRLDKSYCNVADQVLASLLDFKPEEWGLPSFQD 295
>AT5G57440.1 | chr5:23271518-23272900 REVERSE LENGTH=241
Length = 240
Score = 327 bits (839), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 153/231 (66%), Positives = 185/231 (80%), Gaps = 1/231 (0%)
Query: 11 AAPRAAVSHVIFDMDGLLLDTEGFYTEVQEKILARYGKVFDWSLKAKMMGKKATESARIF 70
A R +++HVIFDMDGLLLDTE FYTEVQE ILAR+ K FDWSLKAKMMG+KA E+ARIF
Sbjct: 8 TAGRGSITHVIFDMDGLLLDTEKFYTEVQEIILARFNKKFDWSLKAKMMGRKAIEAARIF 67
Query: 71 VDECGLDGLLTPEQFLEERESMLQELFPSCAVLPGVLRLIHHLHANGVPMAVATGSHKRH 130
V+E G+ L+ E FL ERESMLQ+LFP+ ++PG RLI HLH +P+ +ATG+H RH
Sbjct: 68 VEESGISDSLSAEDFLVERESMLQDLFPTSELMPGASRLIKHLHVKNIPICIATGTHTRH 127
Query: 131 FALKTQNHKEMFTLMHHVVMGDDPDVKTGKPSPDIFLAAMRRF-EGNIEPSNCLVFEDAP 189
+ LKTQ H+E+F+LMHHVV GDDP+VK GKP+PD FLAA RRF +G ++ LVFEDAP
Sbjct: 128 YDLKTQRHRELFSLMHHVVRGDDPEVKQGKPAPDGFLAAARRFKDGPVDSQKVLVFEDAP 187
Query: 190 SGVAAAKNAGMYAVMVPDSRLDVSYHKGADQVLSSLLDFKPGEWGLPPFTD 240
SGV AAKNAGM VMVPD RLD+S+ ADQ+++SL+DFKP EWGLPPF D
Sbjct: 188 SGVLAAKNAGMNVVMVPDPRLDISHQDVADQIITSLVDFKPEEWGLPPFED 238
>AT4G21470.1 | chr4:11431284-11433197 FORWARD LENGTH=380
Length = 379
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 126/230 (54%), Gaps = 20/230 (8%)
Query: 18 SHVIFDMDGLLLDTEGFYTEVQEKILARYGKVFDWSLKAKMMGKKATESARIFVDE---- 73
S V+ D+DG L++T+G ++ K L +YGK +D K++GK E+A V++
Sbjct: 12 SCVLIDLDGTLINTDGVVGDILRKYLCKYGKQWDGRESLKIVGKTPVEAATTIVEDYELP 71
Query: 74 CGLDGLLTPEQFLEERESMLQELFPSCAVLPGVLRLIHHLHANGVPMAVATGSHKRHFAL 133
C +D +F E + LPG RLI HL +GVP+A+A+ S + +
Sbjct: 72 CKVD------EFNSEFYPLFSAQMDKIKSLPGANRLIRHLKCHGVPVALASNSSRANIES 125
Query: 134 KTQNH---KEMFTLMHHVVMGDDPDVKTGKPSPDIFLAAMRRFEGNIEPSNCLVFEDAPS 190
K H KE F+ V++G D +V GKPSPDIFL A +R + + P++CLV ED+
Sbjct: 126 KISYHEGWKECFS----VIVGSD-EVSKGKPSPDIFLEAAKRLKKD--PADCLVIEDSVP 178
Query: 191 GVAAAKNAGMYAVMVPDSRLDVSYHKGADQVLSSLLDFKPGEWGLPPFTD 240
GV A K AG + VP + AD+V++SLLD + +WGLPPF D
Sbjct: 179 GVMAGKAAGTKVIAVPSLPKQTHLYTSADEVINSLLDIRLEKWGLPPFQD 228
>AT4G39970.1 | chr4:18536678-18538429 REVERSE LENGTH=317
Length = 316
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 34/226 (15%)
Query: 10 AAAPRAAVSHVIFDMDGLLLDTEGFYTEVQEKILARY--------GKVFDWSL----KAK 57
+A P ++ +IFD DG++L++E + + + + + DWSL K +
Sbjct: 56 SALPLRSLEALIFDCDGVILESENLHRQAYNDAFSHFDVRCPPSSSESLDWSLEFYDKFQ 115
Query: 58 MMGKKATESARIFVDECGLDG---LLTPEQFLEERESML-----------QELFPSCAV- 102
+ R + E G +P Q ++R ++ +E+ S +V
Sbjct: 116 NLVGGGKPKMRWYFKENGWPTSTIFDSPPQNDDDRAKLIDTLQDWKTERYKEIIKSGSVE 175
Query: 103 -LPGVLRLIHHLHANGVPMAVATGSHKRHFALKTQN--HKEMFTLMHHVVMGDDPDVKTG 159
PGV+RL+ A G +AV + + K L +N E F + + GDD VK
Sbjct: 176 PRPGVIRLMDEAKAAGKKLAVCSAATKSSVILCLENLIDIERFQGLDCFLAGDD--VKEK 233
Query: 160 KPSPDIFLAAMRRFEGNIEPSNCLVFEDAPSGVAAAKNAGMYAVMV 205
KP P I++ A + +++ +CLV ED+ G+ AA AGM V+
Sbjct: 234 KPDPSIYITAAEKLGVSVK--DCLVVEDSVIGLQAATKAGMSCVIT 277
>AT1G56500.1 | chr1:21159775-21167092 FORWARD LENGTH=1056
Length = 1055
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 22/199 (11%)
Query: 17 VSHVIFDMDGLLLDTEGF--------YTEVQEKILARYGKVFDWSLKAKMMGKKATESAR 68
VS V+FDMDG+L ++E +TE+ ++ F + +AK +G A+
Sbjct: 74 VSAVLFDMDGVLCNSEDLSRRAAVDVFTEMGVEVTVDDFVPFMGTGEAKFLGGVAS---- 129
Query: 69 IFVDEC-GLDGLLTPEQFLEERESMLQELFPSCAV-LPGVLRLIHHLHANGVPMAVATGS 126
V E G D E+F E + P + PG L L+ G+ +AVA+ +
Sbjct: 130 --VKEVKGFDPDAAKERFFEIYLDKYAK--PESGIGFPGALELVTECKNKGLKVAVASSA 185
Query: 127 HKRHFALKTQNHKEMFTLMHHVVMGDDPDVKTGKPSPDIFLAAMRRFEGNIEPSNCLVFE 186
+ + T+ +V D + KP+PDIFLAA + + S C+V E
Sbjct: 186 DRIKVDANLKAAGLSLTMFDAIVSADA--FENLKPAPDIFLAAAKIL--GVPTSECVVIE 241
Query: 187 DAPSGVAAAKNAGMYAVMV 205
DA +GV AA+ A M + V
Sbjct: 242 DALAGVQAAQAANMRCIAV 260
>AT2G38740.1 | chr2:16194639-16195995 REVERSE LENGTH=245
Length = 244
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 15/195 (7%)
Query: 15 AAVSHVIFDMDGLLLDTEGFYTEVQEKILARYG-----KVFDWSLKAKMMGKKATESARI 69
A + ++FD+DG L D++ + +++L G + + + GK +E A +
Sbjct: 20 APLEAILFDVDGTLCDSDPIHLIAFQELLQEIGFNNGVPIDEKFFVENIAGKHNSEIALL 79
Query: 70 FVDECGLDGLLTPEQFLEERESMLQELFP-SCAVLPGVLRLIHHLHANGVPMAVATGSHK 128
+ GL +F +E+E++ +++ L G+++L + G+ A T + K
Sbjct: 80 LFPDDVSRGL----KFCDEKEALYRKIVAEKIKPLDGLIKLTKWIEDRGLKRAAVTNAPK 135
Query: 129 RHFALKTQNHKEMFTLMHHVVMGDDPDVKTGKPSPDIFLAAMRRFEGNIEPSNCLVFEDA 188
+ L + V++G + + KP P +L A+ N+ + LVFED+
Sbjct: 136 ENAELMISKLG-LTDFFQAVILGSE--CEFPKPHPGPYLKALEVL--NVSKEHTLVFEDS 190
Query: 189 PSGVAAAKNAGMYAV 203
SG+ A AGM +
Sbjct: 191 ISGIKAGVAAGMPVI 205
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,350,178
Number of extensions: 217847
Number of successful extensions: 554
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 547
Number of HSP's successfully gapped: 6
Length of query: 240
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 144
Effective length of database: 8,474,633
Effective search space: 1220347152
Effective search space used: 1220347152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)