BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0242900 Os08g0242900|AK103204
         (398 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57410.3  | chr5:23264351-23267641 REVERSE LENGTH=392          545   e-155
AT2G18876.1  | chr2:8169683-8172287 FORWARD LENGTH=383            524   e-149

>AT5G57410.3 | chr5:23264351-23267641 REVERSE LENGTH=392
          Length = 391

 Score =  545 bits (1405), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 269/346 (77%), Positives = 301/346 (86%), Gaps = 4/346 (1%)

Query: 45  NLEHCARYLNQTLVTFGFPASLDLFATDPVSIARTCNCIYALLQQRQRDIEFRESTNDLR 104
           NLEHC +YLNQT+VTFGFPASLDLF+ DPVSI+RTCNC+Y+LLQQRQRDIEFRES N+LR
Sbjct: 29  NLEHCTKYLNQTMVTFGFPASLDLFSNDPVSISRTCNCMYSLLQQRQRDIEFRESANELR 88

Query: 105 QRMQSDISRLEAKIERMDAQLAAKDRELATLTRTEAKNTATLKAQIDKLQQERDEFQKMV 164
           QR QSDI+RLEAK+ER++A L  KDRE+AT+TRTEAKNTA LK+QI+KLQQERDEFQ+MV
Sbjct: 89  QRQQSDIARLEAKVERLEALLQQKDREIATITRTEAKNTAALKSQIEKLQQERDEFQRMV 148

Query: 165 IGNQQVRTQQIHEMKKKEKEYIKLQEKLNQVLMEKKKESSRSGMEIMNLLQKEGRQRGTW 224
           IGNQQV+ QQIHEMKKKEK+YIKLQE+LNQVLMEKKKE SRSGMEIMNLLQKEGRQRGTW
Sbjct: 149 IGNQQVKAQQIHEMKKKEKDYIKLQERLNQVLMEKKKE-SRSGMEIMNLLQKEGRQRGTW 207

Query: 225 SGKKNDNDYYKMIVDAYEVKKQELMQENADLRALLRSMQMDMREFLNAPNGVPQPAVVGN 284
           +GKK D D+YK IVDAYE K QELM EN  LRALLRSMQ DMR+FLNAPNG     + G+
Sbjct: 208 NGKKTDTDFYKKIVDAYEAKNQELMAENTSLRALLRSMQTDMRDFLNAPNG--SATLAGS 265

Query: 285 GRQEAGSPQSPLGGKTDVFDLPFHMARDQIEESLRTKMASIKARMTQLQDAQKGAEVTSE 344
            ++EA   QSPLGGKTDVFDLP+ MAR QIEESLRTKMASIK  M QLQDA K A VTSE
Sbjct: 266 EKREADPSQSPLGGKTDVFDLPYRMARGQIEESLRTKMASIKESMVQLQDAPKRASVTSE 325

Query: 345 ATERELELEAQLVEARSIIQEQASLMSKHFTKSDKPRR-LSGLDAE 389
           ATERELELEAQLVEARSIIQEQ S+MSKH  KS++ R  ++ L AE
Sbjct: 326 ATERELELEAQLVEARSIIQEQESIMSKHLPKSEQRRESVASLAAE 371



>AT2G18876.1 | chr2:8169683-8172287 FORWARD LENGTH=383
          Length = 382

 Score =  524 bits (1349), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/337 (75%), Positives = 289/337 (85%), Gaps = 1/337 (0%)

Query: 45  NLEHCARYLNQTLVTFGFPASLDLFATDPVSIARTCNCIYALLQQRQRDIEFRESTNDLR 104
           NLE+C +YLNQ+LVT GF ASLDLFATDPVSIARTCNC+YAL+QQRQRD+EFRES ND R
Sbjct: 33  NLENCIKYLNQSLVTSGFSASLDLFATDPVSIARTCNCVYALIQQRQRDVEFRESANDQR 92

Query: 105 QRMQSDISRLEAKIERMDAQLAAKDRELATLTRTEAKNTATLKAQIDKLQQERDEFQKMV 164
           QR+ SD++RLEAK+ER++ QL AK+REL ++TRTEAKNTA LK Q +KLQ+ERDEFQ+MV
Sbjct: 93  QRLLSDMARLEAKVERLETQLQAKERELGSVTRTEAKNTAALKTQNEKLQKERDEFQRMV 152

Query: 165 IGNQQVRTQQIHEMKKKEKEYIKLQEKLNQVLMEKKKESSRSGMEIMNLLQKEGRQRGTW 224
           I NQQV+TQQ+HE KKKEKEYIKLQE+LNQVLMEKKKE+ RSGMEIMNLLQKEGRQRGTW
Sbjct: 153 IANQQVKTQQLHETKKKEKEYIKLQERLNQVLMEKKKET-RSGMEIMNLLQKEGRQRGTW 211

Query: 225 SGKKNDNDYYKMIVDAYEVKKQELMQENADLRALLRSMQMDMREFLNAPNGVPQPAVVGN 284
           SGKK D+D+YK IVDAYE K QELM EN DLRALLRS Q DMR FLNA  G+   ++V N
Sbjct: 212 SGKKTDSDFYKKIVDAYEAKNQELMAENTDLRALLRSTQGDMRSFLNASGGLTNQSLVAN 271

Query: 285 GRQEAGSPQSPLGGKTDVFDLPFHMARDQIEESLRTKMASIKARMTQLQDAQKGAEVTSE 344
           GR  A   QSPLGGKTDVFDLPF MAR QIE+SLR+KM SIK RM QL DAQK   +TSE
Sbjct: 272 GRHGADPSQSPLGGKTDVFDLPFRMARGQIEDSLRSKMVSIKERMGQLVDAQKEVSITSE 331

Query: 345 ATERELELEAQLVEARSIIQEQASLMSKHFTKSDKPR 381
           A+ERELELEAQLVEARSIIQEQ S+MSKH  K+D+ R
Sbjct: 332 ASERELELEAQLVEARSIIQEQESIMSKHLPKTDRRR 368



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.127    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,800,272
Number of extensions: 265325
Number of successful extensions: 1989
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1998
Number of HSP's successfully gapped: 5
Length of query: 398
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 297
Effective length of database: 8,337,553
Effective search space: 2476253241
Effective search space used: 2476253241
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)