BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0239300 Os08g0239300|AK059753
(263 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G23570.1 | chr3:8458052-8459608 REVERSE LENGTH=240 205 2e-53
AT3G23600.1 | chr3:8473833-8475655 FORWARD LENGTH=240 192 1e-49
AT1G35420.2 | chr1:13026320-13027463 FORWARD LENGTH=316 95 4e-20
>AT3G23570.1 | chr3:8458052-8459608 REVERSE LENGTH=240
Length = 239
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 142/240 (59%), Gaps = 8/240 (3%)
Query: 27 QCLDNPPDLTTXXXXXXXXXXXHDLGGFEAYVTGAVHSRRTILLATDIFGFEAPLLRKIA 86
QC +NPPDL LG + YV G+ HS+ +LL +FG+E P LRK+A
Sbjct: 5 QCTENPPDLDPTSGSGHV----EKLGNLDTYVCGSTHSKLAVLLVPHVFGYETPNLRKLA 60
Query: 87 DKVGLAGYYVVVPDLFHGQPYT-FDQNRT--EWLSAHSPVKAAEDAKPIFAALSKEGKSI 143
DKV AG+Y VVPD FHG PY +Q+R W+ H K E++KPI AL +G +
Sbjct: 61 DKVAEAGFYAVVPDFFHGDPYNPENQDRPFPIWMKDHELEKGFEESKPIVEALKNKGITS 120
Query: 144 VGVGGYCWGGKFAVEVAKTNEVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPPRL 203
+G G+CWG K AVE+AK V+A V+ HPA VT DD+KEV PI +LGA+ D V+PP L
Sbjct: 121 IGAAGFCWGAKVAVELAKEKLVDATVLLHPARVTVDDIKEVNLPIAVLGAEIDQVSPPEL 180
Query: 204 VYQFVHALRQRTDQIDYFAKVFQGVNHGFACRYNASNPFEVKKAEQALALMLDWFHKHLK 263
V QF L + Q+ F K+F HG+ RYN ++P EV+ A +A ML W +LK
Sbjct: 181 VRQFEDILASKP-QVKSFVKIFPRCKHGWTVRYNENDPSEVEAAMEAHKDMLAWLIDYLK 239
>AT3G23600.1 | chr3:8473833-8475655 FORWARD LENGTH=240
Length = 239
Score = 192 bits (489), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 141/240 (58%), Gaps = 8/240 (3%)
Query: 27 QCLDNPPDLTTXXXXXXXXXXXHDLGGFEAYVTGAVHSRRTILLATDIFGFEAPLLRKIA 86
QC +NPP L LGG +AYV+G+ S+ +LL +DIFGFEAP LR +A
Sbjct: 5 QCCENPPTLNPVSGSGHV----EKLGGLDAYVSGSAESKLCVLLISDIFGFEAPNLRALA 60
Query: 87 DKVGLAGYYVVVPDLFHGQPYT-FDQNRT--EWLSAHSPVKAAEDAKPIFAALSKEGKSI 143
DKV +G+YVVVPD F G PY +Q+R W+ H K E+ KP+ + +G +
Sbjct: 61 DKVAASGFYVVVPDYFGGDPYNPSNQDRPIPVWIKDHGCDKGFENTKPVLETIKNKGITA 120
Query: 144 VGVGGYCWGGKFAVEVAKTNEVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPPRL 203
+G G CWG K VE++K ++A V+ HP+ V DD+K K PI ILGA+ D ++PP L
Sbjct: 121 IGAAGMCWGAKVVVELSKEELIQAAVLLHPSFVNVDDIKGGKAPIAILGAEIDQMSPPAL 180
Query: 204 VYQFVHALRQRTDQIDYFAKVFQGVNHGFACRYNASNPFEVKKAEQALALMLDWFHKHLK 263
+ QF L + +++ + K+ V+HG+ RYN P VK AE+A MLDWF ++K
Sbjct: 181 LKQFEEILSSKP-EVNSYVKIHPKVSHGWTVRYNIDEPEAVKAAEEAHKEMLDWFVTYIK 239
>AT1G35420.2 | chr1:13026320-13027463 FORWARD LENGTH=316
Length = 315
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 107/225 (47%), Gaps = 24/225 (10%)
Query: 53 GFEAYVTGAVHSRRT--ILLATDIFGFEAPLLRKIADKVGLAGYYVVVPDLFHGQPYTFD 110
G E Y+ AV + +LL +D+FGF+ R A +V GY V+VPDLF G P++ +
Sbjct: 99 GVEGYLLTAVKNNNGTGLLLLSDVFGFQDSATRDFAYRVACNGYNVLVPDLFRGDPWSKN 158
Query: 111 QNRT---EWLSAHSPVKAAEDAKPI-------FAALSKEGKSIVGVGGYCWGGKFAVEVA 160
+ ++ EW H P + +D FAA K +GV G+C+GG V+V
Sbjct: 159 RPKSEYEEWRRGHDPNRIRQDTTTFTKWMVEEFAAAGISKK--LGVMGFCFGGGRVVDVL 216
Query: 161 KTNE---VEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPPRLVYQFVHALRQRTDQ 217
T+E V + + + +VK P+ + D + + +Y+ + + +
Sbjct: 217 ATDESGYFSTGVSFYGTRIDSAVAGDVKVPVLFIAGDRDPLCEVKGLYEIEEKIGEGSKV 276
Query: 218 IDYFAKVFQGVNHGFACRYNASNPFEVKKAEQALALMLDWFHKHL 262
+ V++G HGF R P + + AE+A ALM +W H HL
Sbjct: 277 V-----VYEGRGHGFVHR--PETPEDDRDAEEAFALMRNWLHHHL 314
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.138 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,393,601
Number of extensions: 208202
Number of successful extensions: 395
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 3
Length of query: 263
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 166
Effective length of database: 8,447,217
Effective search space: 1402238022
Effective search space used: 1402238022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)