BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0239100 Os08g0239100|Os08g0239100
         (208 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23570.1  | chr3:8458052-8459608 REVERSE LENGTH=240            139   1e-33
AT3G23600.1  | chr3:8473833-8475655 FORWARD LENGTH=240            129   1e-30
AT1G35420.2  | chr1:13026320-13027463 FORWARD LENGTH=316           59   2e-09

>AT3G23570.1 | chr3:8458052-8459608 REVERSE LENGTH=240
          Length = 239

 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/195 (43%), Positives = 104/195 (53%), Gaps = 23/195 (11%)

Query: 24  QCLDNPPDL--TAGGGEAGVVVHDLAGFEAYVTGAVHSTKAVLLASDVFGFEAPLLRKIA 81
           QC +NPPDL  T+G G     V  L   + YV G+ HS  AVLL   VFG+E P LRK+A
Sbjct: 5   QCTENPPDLDPTSGSGH----VEKLGNLDTYVCGSTHSKLAVLLVPHVFGYETPNLRKLA 60

Query: 82  DKVGQAGYYVAVPDFFHGDPY---TLDLNLTEWFSKHSPMKILSSCTYQDAQIKPQIKQN 138
           DKV +AG+Y  VPDFFHGDPY     D     W   H     L     +   I   +K  
Sbjct: 61  DKVAEAGFYAVVPDFFHGDPYNPENQDRPFPIWMKDHE----LEKGFEESKPIVEALKNK 116

Query: 139 YIQR----------KFAVEVAKTNEVEAIVTTHPGLVTVDDIKEVKCPIEIIGAQNDTLT 188
            I            K AVE+AK   V+A V  HP  VTVDDIKEV  PI ++GA+ D ++
Sbjct: 117 GITSIGAAGFCWGAKVAVELAKEKLVDATVLLHPARVTVDDIKEVNLPIAVLGAEIDQVS 176

Query: 189 PPKLVYQYVQALRHR 203
           PP+LV Q+   L  +
Sbjct: 177 PPELVRQFEDILASK 191



>AT3G23600.1 | chr3:8473833-8475655 FORWARD LENGTH=240
          Length = 239

 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/198 (39%), Positives = 101/198 (51%), Gaps = 25/198 (12%)

Query: 24  QCLDNPPDLTAGGGEAGVVVHDLAGFEAYVTGAVHSTKAVLLASDVFGFEAPLLRKIADK 83
           QC +NPP L    G   V    L G +AYV+G+  S   VLL SD+FGFEAP LR +ADK
Sbjct: 5   QCCENPPTLNPVSGSGHV--EKLGGLDAYVSGSAESKLCVLLISDIFGFEAPNLRALADK 62

Query: 84  VGQAGYYVAVPDFFHGDPY---TLDLNLTEWFSKHSPMKILSSCTYQDAQIKP---QIKQ 137
           V  +G+YV VPD+F GDPY     D  +  W   H        C       KP    IK 
Sbjct: 63  VAASGFYVVVPDYFGGDPYNPSNQDRPIPVWIKDH-------GCDKGFENTKPVLETIKN 115

Query: 138 NYIQ----------RKFAVEVAKTNEVEAIVTTHPGLVTVDDIKEVKCPIEIIGAQNDTL 187
             I            K  VE++K   ++A V  HP  V VDDIK  K PI I+GA+ D +
Sbjct: 116 KGITAIGAAGMCWGAKVVVELSKEELIQAAVLLHPSFVNVDDIKGGKAPIAILGAEIDQM 175

Query: 188 TPPKLVYQYVQALRHRTD 205
           +PP L+ Q+ + L  + +
Sbjct: 176 SPPALLKQFEEILSSKPE 193



>AT1G35420.2 | chr1:13026320-13027463 FORWARD LENGTH=316
          Length = 315

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 67/167 (40%), Gaps = 19/167 (11%)

Query: 48  GFEAYVTGAVHSTKA--VLLASDVFGFEAPLLRKIADKVGQAGYYVAVPDFFHGDPYTLD 105
           G E Y+  AV +     +LL SDVFGF+    R  A +V   GY V VPD F GDP++ +
Sbjct: 99  GVEGYLLTAVKNNNGTGLLLLSDVFGFQDSATRDFAYRVACNGYNVLVPDLFRGDPWSKN 158

Query: 106 L---NLTEWFSKHSPMKILSSCTYQDAQIKPQIKQNYIQRKFAVE---VAKTNEVEAIVT 159
                  EW   H P +I    T     +  +     I +K  V          V+ + T
Sbjct: 159 RPKSEYEEWRRGHDPNRIRQDTTTFTKWMVEEFAAAGISKKLGVMGFCFGGGRVVDVLAT 218

Query: 160 THPGLVT---------VDD--IKEVKCPIEIIGAQNDTLTPPKLVYQ 195
              G  +         +D     +VK P+  I    D L   K +Y+
Sbjct: 219 DESGYFSTGVSFYGTRIDSAVAGDVKVPVLFIAGDRDPLCEVKGLYE 265



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,316,343
Number of extensions: 165547
Number of successful extensions: 423
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 3
Length of query: 208
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 114
Effective length of database: 8,529,465
Effective search space: 972359010
Effective search space used: 972359010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)