BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0238200 Os08g0238200|AK067264
         (276 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23570.1  | chr3:8458052-8459608 REVERSE LENGTH=240            216   1e-56
AT3G23600.1  | chr3:8473833-8475655 FORWARD LENGTH=240            214   4e-56
AT1G35420.2  | chr1:13026320-13027463 FORWARD LENGTH=316           93   2e-19

>AT3G23570.1 | chr3:8458052-8459608 REVERSE LENGTH=240
          Length = 239

 Score =  216 bits (550), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 111/236 (47%), Positives = 145/236 (61%), Gaps = 6/236 (2%)

Query: 43  ENPPELT-AAGDGEAGVVVQNLGGFAAYVTGAAHSGRAIVLASDVFGFEAPLLRKIADKV 101
           ENPP+L   +G G     V+ LG    YV G+ HS  A++L   VFG+E P LRK+ADKV
Sbjct: 8   ENPPDLDPTSGSGH----VEKLGNLDTYVCGSTHSKLAVLLVPHVFGYETPNLRKLADKV 63

Query: 102 GEAGYYVVVPDFFQGRPYNGDPSIN-ITQWIMAHSPVKAAEDSKPIFAALKREGKSVVGV 160
            EAG+Y VVPDFF G PYN +        W+  H   K  E+SKPI  ALK +G + +G 
Sbjct: 64  AEAGFYAVVPDFFHGDPYNPENQDRPFPIWMKDHELEKGFEESKPIVEALKNKGITSIGA 123

Query: 161 GGYCWGGKLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQ 220
            G+CWG K+AVE+AK   V A V+ HP+ VT DD+K+V  PI +LGAE D V+PP LV Q
Sbjct: 124 AGFCWGAKVAVELAKEKLVDATVLLHPARVTVDDIKEVNLPIAVLGAEIDQVSPPELVRQ 183

Query: 221 FVNALRQRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
           F + L  +P+V  F +IFP   HG+  RYN ++P  V  A ++   ML W   +LK
Sbjct: 184 FEDILASKPQVKSFVKIFPRCKHGWTVRYNENDPSEVEAAMEAHKDMLAWLIDYLK 239



>AT3G23600.1 | chr3:8473833-8475655 FORWARD LENGTH=240
          Length = 239

 Score =  214 bits (545), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 109/236 (46%), Positives = 148/236 (62%), Gaps = 6/236 (2%)

Query: 43  ENPPELT-AAGDGEAGVVVQNLGGFAAYVTGAAHSGRAIVLASDVFGFEAPLLRKIADKV 101
           ENPP L   +G G     V+ LGG  AYV+G+A S   ++L SD+FGFEAP LR +ADKV
Sbjct: 8   ENPPTLNPVSGSGH----VEKLGGLDAYVSGSAESKLCVLLISDIFGFEAPNLRALADKV 63

Query: 102 GEAGYYVVVPDFFQGRPYN-GDPSINITQWIMAHSPVKAAEDSKPIFAALKREGKSVVGV 160
             +G+YVVVPD+F G PYN  +    I  WI  H   K  E++KP+   +K +G + +G 
Sbjct: 64  AASGFYVVVPDYFGGDPYNPSNQDRPIPVWIKDHGCDKGFENTKPVLETIKNKGITAIGA 123

Query: 161 GGYCWGGKLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQ 220
            G CWG K+ VE++K   + A V+ HPS V  DD+K  K PI ILGAE D ++PP L+ Q
Sbjct: 124 AGMCWGAKVVVELSKEELIQAAVLLHPSFVNVDDIKGGKAPIAILGAEIDQMSPPALLKQ 183

Query: 221 FVNALRQRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
           F   L  +PEV+ + +I P V+HG+  RYN   P AV+ AE++   MLDWF  ++K
Sbjct: 184 FEEILSSKPEVNSYVKIHPKVSHGWTVRYNIDEPEAVKAAEEAHKEMLDWFVTYIK 239



>AT1G35420.2 | chr1:13026320-13027463 FORWARD LENGTH=316
          Length = 315

 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 15/210 (7%)

Query: 75  HSGRAIVLASDVFGFEAPLLRKIADKVGEAGYYVVVPDFFQGRPYNGD-PSINITQWIMA 133
           ++G  ++L SDVFGF+    R  A +V   GY V+VPD F+G P++ + P     +W   
Sbjct: 111 NNGTGLLLLSDVFGFQDSATRDFAYRVACNGYNVLVPDLFRGDPWSKNRPKSEYEEWRRG 170

Query: 134 HSPVKAAEDSKPIFAALKREGKSV-----VGVGGYCWGGKLAVEVAKTNEVGAI---VIS 185
           H P +  +D+      +  E  +      +GV G+C+GG   V+V  T+E G     V  
Sbjct: 171 HDPNRIRQDTTTFTKWMVEEFAAAGISKKLGVMGFCFGGGRVVDVLATDESGYFSTGVSF 230

Query: 186 HPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQFVNALRQRPEVDYFARIFPGVAHGF 245
           + + + +    DVK P+  +  + D +   + +Y+    + +  +V     ++ G  HGF
Sbjct: 231 YGTRIDSAVAGDVKVPVLFIAGDRDPLCEVKGLYEIEEKIGEGSKV----VVYEGRGHGF 286

Query: 246 ACRYNASNPFAVRTAEQSLALMLDWFEKHL 275
             R     P   R AE++ ALM +W   HL
Sbjct: 287 VHR--PETPEDDRDAEEAFALMRNWLHHHL 314



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,420,567
Number of extensions: 216445
Number of successful extensions: 461
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 3
Length of query: 276
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 179
Effective length of database: 8,447,217
Effective search space: 1512051843
Effective search space used: 1512051843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)