BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0236800 Os08g0236800|AK067773
         (71 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26000.1  | chr3:9507042-9508542 REVERSE LENGTH=454             52   5e-08

>AT3G26000.1 | chr3:9507042-9508542 REVERSE LENGTH=454
          Length = 453

 Score = 52.4 bits (124), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 2   LSILGCPRLTLDGLISNLKSFNTNAVFGIKHLRVGTLFSLRKEQYEELLSLLNTD----- 56
           + + GC R+T+DG++S L+   +     +KHL++  LF + K+ Y+EL+ LLN D     
Sbjct: 295 IGVPGCTRITIDGILSVLRDLKSAGKLQVKHLQLRGLFGVTKDHYDELIDLLNIDNKVKQ 354

Query: 57  --KTQEVHNRGPKIPSC 71
             +    ++RG    SC
Sbjct: 355 TIQKPRFYHRGEACVSC 371



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,447,968
Number of extensions: 44204
Number of successful extensions: 104
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 1
Length of query: 71
Length of database: 11,106,569
Length adjustment: 43
Effective length of query: 28
Effective length of database: 9,927,681
Effective search space: 277975068
Effective search space used: 277975068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)