BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0230200 Os08g0230200|AK069639
(482 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G16860.1 | chr1:5768280-5770183 FORWARD LENGTH=475 602 e-172
AT1G78880.1 | chr1:29653068-29654819 REVERSE LENGTH=469 590 e-169
AT4G22290.1 | chr4:11783199-11785730 REVERSE LENGTH=446 409 e-114
>AT1G16860.1 | chr1:5768280-5770183 FORWARD LENGTH=475
Length = 474
Score = 602 bits (1552), Expect = e-172, Method: Compositional matrix adjust.
Identities = 304/484 (62%), Positives = 352/484 (72%), Gaps = 12/484 (2%)
Query: 1 MGSRFPSHQLSNGLYVSGRPEQPKEKAPVICSTAMPYTGGDIKKSGELGKMFDLHVE--K 58
MGSR+PSHQLSNGL+VSGRPEQPKE+AP + + AMPYTGGDIK+SGELGKMFD+ + K
Sbjct: 1 MGSRYPSHQLSNGLFVSGRPEQPKERAPTMSAVAMPYTGGDIKRSGELGKMFDIPADGTK 60
Query: 59 SRKSGPLGNQPSRNTSFGGAGSNSGPVSNALXXXXXXXXXXXXXXXXXXXARAKSNSGPL 118
SRKSGP+ PSR+ SF G + SGP + K+NSGPL
Sbjct: 61 SRKSGPIPGAPSRSGSFAGT-AQSGP-----GAPMATGRMSGSLASAGSVSMKKTNSGPL 114
Query: 119 NKHXXXXXXXXXXXXXXVTPMARQNSXXXXXXXXXXXXITSGPISSGPLNSSGAPRKVSG 178
+KH VT RQNS ITSGPI+SGPLNSSGAPRKVSG
Sbjct: 115 SKHGEPLKKSSGPQSGGVT---RQNSGSIPILPATGL-ITSGPITSGPLNSSGAPRKVSG 170
Query: 179 PLDPSVSMKMRATSFAHNPAVTNLNADDGYSIKGSIPKTILWMVILLFLMGFIAGGFILG 238
PLD S MK + HN AVT L +D +S S PK +LW+V+L+F+MGF+AGGFILG
Sbjct: 171 PLDSSGLMKSHMPTVVHNQAVTTLGPEDDFSCLKSFPKPVLWLVVLIFIMGFLAGGFILG 230
Query: 239 AVHNPXXXXXXXXXXXXXXXXXXWNICWGTRGVTGFVSRYPDADLRTAKDGQYVKVTGVV 298
AVHNP WNICWG RG+T F++RYPDADLRTAK+GQ+VKVTGVV
Sbjct: 231 AVHNPILLVVVAILFTVVAALFIWNICWGRRGITDFIARYPDADLRTAKNGQHVKVTGVV 290
Query: 299 TCGNFPLESSFQRVPRCVYTSTCLYEYRGWDSKAANTEHRQFTWGLRSMERHAVDFYISD 358
TCGN PLESSF RVPRCVYTSTCLYEYRGW SK AN+ HR FTWGLRS ERH VDFYISD
Sbjct: 291 TCGNVPLESSFHRVPRCVYTSTCLYEYRGWGSKPANSSHRHFTWGLRSSERHVVDFYISD 350
Query: 359 FQSGLRALVKTGYGARVTPYVDESVVIDINPDNKDMSPEFLRWLRERNLSSDDRIMRLKE 418
FQSGLRALVKTG GA+VTP VD+SVVID ++ +SP+F+RWL ++NL+SDDRIMRLKE
Sbjct: 351 FQSGLRALVKTGSGAKVTPLVDDSVVIDFKQGSEQVSPDFVRWLGKKNLTSDDRIMRLKE 410
Query: 419 GYIKEGSTVSVMGVVQRNDNVLMIVPPSEPISTGCQWAKCILPTSLDGLVLRCEDTSNID 478
GYIKEGSTVSV+GVVQRNDNVLMIVP SEP++ G QW +C PTSL+G+VLRCED+SN+D
Sbjct: 411 GYIKEGSTVSVIGVVQRNDNVLMIVPSSEPLAAGWQWRRCTFPTSLEGIVLRCEDSSNVD 470
Query: 479 VIPV 482
IPV
Sbjct: 471 AIPV 474
>AT1G78880.1 | chr1:29653068-29654819 REVERSE LENGTH=469
Length = 468
Score = 590 bits (1521), Expect = e-169, Method: Compositional matrix adjust.
Identities = 304/484 (62%), Positives = 347/484 (71%), Gaps = 18/484 (3%)
Query: 1 MGSRFPSHQLSNGLYVSGRPEQPKEKAPVICSTAMPYTGGDIKKSGELGKMFDLHVE--K 58
MGSR+ SHQLSNGL+VSGRPEQPKEK P + S AMPYTGGDIKKSGELGKMFD+ + K
Sbjct: 1 MGSRYASHQLSNGLFVSGRPEQPKEKPPTMSSVAMPYTGGDIKKSGELGKMFDIPTDGTK 60
Query: 59 SRKSGPLGNQPSRNTSFGGAGSNSGPVSNALXXXXXXXXXXXXXXXXXXXARAKSNSGPL 118
SRKSGP+ SR +G+ SGPV NA + K+NSGPL
Sbjct: 61 SRKSGPITGGSSR------SGAQSGPVPNA------TGRMSGNLASAGSNSMKKTNSGPL 108
Query: 119 NKHXXXXXXXXXXXXXXVTPMARQNSXXXXXXXXXXXXITSGPISSGPLNSSGAPRKVSG 178
+KH VT RQNS ITSGPI+SGPLNSSGAPRK+SG
Sbjct: 109 SKHGEPLKKSSGPQSGGVT---RQNSGPIPILPTTGL-ITSGPITSGPLNSSGAPRKISG 164
Query: 179 PLDPSVSMKMRATSFAHNPAVTNLNADDGYSIKGSIPKTILWMVILLFLMGFIAGGFILG 238
PLD S SMK S HN AVT L +D +S S PK +LW+VIL+F+MGF+AGGFILG
Sbjct: 165 PLDYSGSMKTHMPSVVHNQAVTTLAPEDDFSCMKSFPKPVLWLVILIFVMGFLAGGFILG 224
Query: 239 AVHNPXXXXXXXXXXXXXXXXXXWNICWGTRGVTGFVSRYPDADLRTAKDGQYVKVTGVV 298
AVHN WNI RG+T F++RYPDADLRTAK+GQYVKVTGVV
Sbjct: 225 AVHNAILLIVVAVLFTVVAALFIWNISCERRGITDFIARYPDADLRTAKNGQYVKVTGVV 284
Query: 299 TCGNFPLESSFQRVPRCVYTSTCLYEYRGWDSKAANTEHRQFTWGLRSMERHAVDFYISD 358
TCGN PLESSF RVPRCVYTSTCLYEYRGW SK AN HR+FTWGLRS ERH VDFYISD
Sbjct: 285 TCGNVPLESSFHRVPRCVYTSTCLYEYRGWGSKPANASHRRFTWGLRSAERHVVDFYISD 344
Query: 359 FQSGLRALVKTGYGARVTPYVDESVVIDINPDNKDMSPEFLRWLRERNLSSDDRIMRLKE 418
FQSGLRALVKTG GA+VTP VD+SVVID P N+ SP+F+RWL ++NL++DDRIMRLKE
Sbjct: 345 FQSGLRALVKTGNGAKVTPLVDDSVVIDFKPGNEQASPDFVRWLGKKNLTNDDRIMRLKE 404
Query: 419 GYIKEGSTVSVMGVVQRNDNVLMIVPPSEPISTGCQWAKCILPTSLDGLVLRCEDTSNID 478
GYIKEGSTVSV+GVVQRNDNVLMIVP +EP++ G QW+KC P SL+G+VLRCED+SN+D
Sbjct: 405 GYIKEGSTVSVIGVVQRNDNVLMIVPTTEPLAAGWQWSKCTFPASLEGIVLRCEDSSNVD 464
Query: 479 VIPV 482
IPV
Sbjct: 465 AIPV 468
>AT4G22290.1 | chr4:11783199-11785730 REVERSE LENGTH=446
Length = 445
Score = 409 bits (1052), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/486 (45%), Positives = 295/486 (60%), Gaps = 45/486 (9%)
Query: 1 MGSRFPSHQLSNGLYVSGRPEQPKEKAPVICSTAMPYTGGDIKKSGELGKMFDLH-VEKS 59
M R SHQL NGLYVSG+ EQPKE+ P + + A+PYTGGDIKKSGELG+MFD+ V+ +
Sbjct: 1 MAGRIQSHQLPNGLYVSGKLEQPKERPPTMAARAVPYTGGDIKKSGELGRMFDISVVDSA 60
Query: 60 RKSGPLGNQPSRNTSFGGAGSNSGPVSNALXXXXXXXXXXXXXXXXXXXARAKSNSGPLN 119
GP N+S G + + P R+ NSG +
Sbjct: 61 SFQGPPPLIVGGNSSGGTSRLQAPP-----------RVSGSSSNPNSGSVRSGPNSGSVK 109
Query: 120 KHXXXXXXXXXXXXXXVTPMARQNSXXXXXXXXXXXXITSGPISSGPLNSSG---APRKV 176
K P+++ +G I+SG L SSG + +
Sbjct: 110 KFSG--------------PLSQLQ--------------PTGLITSGSLGSSGPILSGSRR 141
Query: 177 SGPLDPSVSMKMRATSFAHNPAVTNLNADDGYSIKGSIPKTILWMVILLFLMGFIAGGFI 236
SG LD +S + ++ + +VT+LN D + +PK ++W V+++ MG + G F+
Sbjct: 142 SGQLDHQLS-NLASSKPKYGSSVTSLNVDP-VRVGFKVPKAMVWAVLIVAAMGLLVGAFL 199
Query: 237 LGAVHNPXXXXXXXXXXXXXXXXXXWNICWGTRGVTGFVSRYPDADLRTAKDGQYVKVTG 296
AV P WN W +G+ F+ +YPDA+LR A DGQ+VKVTG
Sbjct: 200 TVAVKKPVVIAAVLAAVCPAIVVLVWNCVWRRKGLLSFIKKYPDAELRGAIDGQFVKVTG 259
Query: 297 VVTCGNFPLESSFQRVPRCVYTSTCLYEYRGWDSKAANTEHRQFTWGLRSMERHAVDFYI 356
VVTCG+ PLESSFQR PRCVY ST LYEY+G+ K+AN +HR F+WG R E++ DFYI
Sbjct: 260 VVTCGSIPLESSFQRTPRCVYVSTELYEYKGFGGKSANPKHRCFSWGSRHAEKYVSDFYI 319
Query: 357 SDFQSGLRALVKTGYGARVTPYVDESVVIDINPDNKDMSPEFLRWLRERNLSSDDRIMRL 416
SDFQSGLRALVK GYG++V+P+V + V ++ NKD+SP FL+WL +RNLS+DDR+MRL
Sbjct: 320 SDFQSGLRALVKAGYGSKVSPFVKPATVANVTTQNKDLSPSFLKWLSDRNLSADDRVMRL 379
Query: 417 KEGYIKEGSTVSVMGVVQRNDNVLMIVPPSEPISTGCQWAKCILPTSLDGLVLRCEDTSN 476
KEGYIKEGSTVSVMG+V+R+DNVLMIVPP+E +S+GC+W C+ PT DGL++ C+D N
Sbjct: 380 KEGYIKEGSTVSVMGMVRRHDNVLMIVPPAEAVSSGCRWWHCLFPTYADGLIITCDDNQN 439
Query: 477 IDVIPV 482
DVIPV
Sbjct: 440 ADVIPV 445
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,726,734
Number of extensions: 389972
Number of successful extensions: 866
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 857
Number of HSP's successfully gapped: 4
Length of query: 482
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 380
Effective length of database: 8,310,137
Effective search space: 3157852060
Effective search space used: 3157852060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)