BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0172300 Os08g0172300|AK111274
(102 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G19260.1 | chr1:6657260-6659569 REVERSE LENGTH=770 108 6e-25
AT2G06541.1 | chr2:2598222-2600326 REVERSE LENGTH=593 107 1e-24
AT3G29765.1 | chr3:11595467-11597077 REVERSE LENGTH=537 104 1e-23
AT3G31402.1 | chr3:12770931-12773539 REVERSE LENGTH=394 89 4e-19
AT4G09660.1 | chr4:6104446-6106607 FORWARD LENGTH=665 86 5e-18
AT3G30235.1 | chr3:11882266-11883625 FORWARD LENGTH=169 50 2e-07
>AT1G19260.1 | chr1:6657260-6659569 REVERSE LENGTH=770
Length = 769
Score = 108 bits (270), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 75/100 (75%)
Query: 1 LAQFYPKDFTETELLHLPFQLTLFINFVRKDERFKNVKNLVELSTMLVATKKHTAYEFVY 60
L +FYP DF+ E L QL ++++ V+ DERF ++K L +L+ ++V T+KH ++ VY
Sbjct: 636 LTEFYPDDFSFVERRSLDHQLEIYLDNVKNDERFTDLKCLGDLARVMVETRKHLSHPLVY 695
Query: 61 KLLKLVLILPVATASVERVFSSMNYVKNKLRNRMGEQYLN 100
+LLK+ LILPVATA+VER FS+MN+VK LRNR+G+ +L+
Sbjct: 696 RLLKVSLILPVATATVERCFSAMNFVKTTLRNRIGDMFLS 735
>AT2G06541.1 | chr2:2598222-2600326 REVERSE LENGTH=593
Length = 592
Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Query: 1 LAQFYPKDFTETELLHLPFQLTLFINFVRKDERFKNVKNLVELSTMLVATKKHTAYEFVY 60
LA+FYP+DFT + L QL L+I+ +R+D+RF N+K+L +L+ +++ T+KH ++ VY
Sbjct: 460 LAEFYPQDFTRVDWRSLEHQLGLYIDNIREDDRFANLKSLGDLARVMIETRKHLSHPQVY 519
Query: 61 KLLKLVLILPVATASVERVFSSMNYVKNKLRNRMGEQYLN 100
+LLK+VL LP+ATA+VER FS+ VK LRNR+ +Q+LN
Sbjct: 520 RLLKVVLTLPIATATVERCFSA-TVVKTTLRNRISDQFLN 558
>AT3G29765.1 | chr3:11595467-11597077 REVERSE LENGTH=537
Length = 536
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 74/100 (74%)
Query: 1 LAQFYPKDFTETELLHLPFQLTLFINFVRKDERFKNVKNLVELSTMLVATKKHTAYEFVY 60
L +FYP DF+ E L QL ++++ V+ DERF ++++L +L+ ++V T+KH ++ VY
Sbjct: 403 LTEFYPDDFSFVERRSLDHQLEIYLDNVKNDERFTDLEHLGDLARVMVETRKHLSHPLVY 462
Query: 61 KLLKLVLILPVATASVERVFSSMNYVKNKLRNRMGEQYLN 100
+LLKL LILPVATA+V R FS+MN+VK LRNR G+ +L+
Sbjct: 463 RLLKLSLILPVATATVVRCFSAMNFVKTTLRNRFGDVFLS 502
>AT3G31402.1 | chr3:12770931-12773539 REVERSE LENGTH=394
Length = 393
Score = 89.4 bits (220), Expect = 4e-19, Method: Composition-based stats.
Identities = 45/98 (45%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Query: 1 LAQFYPKDFTETELLHLPFQLTLFINFVRKDERFKNVKNLVELSTMLVATKKHTAYEFVY 60
L++FY DF+ E + + +L+++I+ VR DERF N+KNL +++ +V T+KH +Y F Y
Sbjct: 276 LSKFYQVDFSLGEFISIEKELSIYIDTVRNDERFSNLKNLGDIAQKVVETRKHLSYPFGY 335
Query: 61 KLLKLVLILPVATASVERVFSSMNYVKNKLRNRMGEQY 98
+LLKLVLIL VATA+VER FS+M +++ + N G+ +
Sbjct: 336 RLLKLVLILHVATATVERCFSAMK-IRSPVLNYQGDDF 372
>AT4G09660.1 | chr4:6104446-6106607 FORWARD LENGTH=665
Length = 664
Score = 85.5 bits (210), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 60/83 (72%)
Query: 1 LAQFYPKDFTETELLHLPFQLTLFINFVRKDERFKNVKNLVELSTMLVATKKHTAYEFVY 60
L +FYP +F+ E L QL ++++ V+ DERF ++K +L+ ++V T+KH ++ VY
Sbjct: 580 LTEFYPDEFSFVERRSLDHQLEIYLDNVKNDERFTDLKCFGDLARVMVETRKHLSHPLVY 639
Query: 61 KLLKLVLILPVATASVERVFSSM 83
+LLKL LILPVATA+VER FS+M
Sbjct: 640 RLLKLSLILPVATATVERCFSAM 662
>AT3G30235.1 | chr3:11882266-11883625 FORWARD LENGTH=169
Length = 168
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 29/36 (80%)
Query: 61 KLLKLVLILPVATASVERVFSSMNYVKNKLRNRMGE 96
+LLKL+LIL VATA+VER FS+M VK RNR+G+
Sbjct: 133 RLLKLILILHVATATVERCFSAMKIVKTDRRNRIGD 168
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.138 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,843,481
Number of extensions: 55851
Number of successful extensions: 207
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 6
Length of query: 102
Length of database: 11,106,569
Length adjustment: 72
Effective length of query: 30
Effective length of database: 9,132,617
Effective search space: 273978510
Effective search space used: 273978510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)