BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0162000 Os08g0162000|AK119463
(68 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G01970.1 | chr2:452197-454819 REVERSE LENGTH=593 88 1e-18
AT1G14670.1 | chr1:5037669-5040199 FORWARD LENGTH=593 86 5e-18
AT5G37310.1 | chr5:14772836-14776093 REVERSE LENGTH=594 85 9e-18
AT1G08350.2 | chr1:2632970-2635605 REVERSE LENGTH=590 70 2e-13
AT1G10950.1 | chr1:3659322-3663622 FORWARD LENGTH=590 59 5e-10
>AT2G01970.1 | chr2:452197-454819 REVERSE LENGTH=593
Length = 592
Score = 87.8 bits (216), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/40 (90%), Positives = 37/40 (92%)
Query: 27 DGSDHRYKDGDYVPLYANKVGPFHNPSETYRYYDLPFCAP 66
D SDHRYKDGD VPLYANKVGPFHNPSETYRY+DLPFC P
Sbjct: 25 DASDHRYKDGDSVPLYANKVGPFHNPSETYRYFDLPFCIP 64
>AT1G14670.1 | chr1:5037669-5040199 FORWARD LENGTH=593
Length = 592
Score = 85.5 bits (210), Expect = 5e-18, Method: Composition-based stats.
Identities = 35/40 (87%), Positives = 37/40 (92%)
Query: 27 DGSDHRYKDGDYVPLYANKVGPFHNPSETYRYYDLPFCAP 66
D SDHRYK+GD VPLYANKVGPFHNPSETYRY+DLPFC P
Sbjct: 25 DASDHRYKEGDTVPLYANKVGPFHNPSETYRYFDLPFCIP 64
>AT5G37310.1 | chr5:14772836-14776093 REVERSE LENGTH=594
Length = 593
Score = 84.7 bits (208), Expect = 9e-18, Method: Composition-based stats.
Identities = 35/39 (89%), Positives = 37/39 (94%)
Query: 27 DGSDHRYKDGDYVPLYANKVGPFHNPSETYRYYDLPFCA 65
DGSDHRYK GD VPLYANKVGPFHNPSETYRY+DLPFC+
Sbjct: 26 DGSDHRYKVGDDVPLYANKVGPFHNPSETYRYFDLPFCS 64
>AT1G08350.2 | chr1:2632970-2635605 REVERSE LENGTH=590
Length = 589
Score = 70.5 bits (171), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/40 (70%), Positives = 32/40 (80%)
Query: 28 GSDHRYKDGDYVPLYANKVGPFHNPSETYRYYDLPFCAPG 67
GS + Y GD+VPL+ NKVGP HNPSETY+YYDLPFC G
Sbjct: 24 GSSNHYNAGDHVPLFVNKVGPLHNPSETYQYYDLPFCRRG 63
>AT1G10950.1 | chr1:3659322-3663622 FORWARD LENGTH=590
Length = 589
Score = 58.9 bits (141), Expect = 5e-10, Method: Composition-based stats.
Identities = 23/38 (60%), Positives = 29/38 (76%)
Query: 29 SDHRYKDGDYVPLYANKVGPFHNPSETYRYYDLPFCAP 66
SDH+Y+ + V L+ NKVGP++NP ETY YY LPFC P
Sbjct: 27 SDHKYQAEEQVTLWVNKVGPYNNPQETYNYYSLPFCRP 64
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.146 0.490
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,217,683
Number of extensions: 34143
Number of successful extensions: 69
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 5
Length of query: 68
Length of database: 11,106,569
Length adjustment: 40
Effective length of query: 28
Effective length of database: 10,009,929
Effective search space: 280278012
Effective search space used: 280278012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)