BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0154200 Os08g0154200|AK103192
         (214 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09620.1  | chr3:2949152-2952205 REVERSE LENGTH=990            188   2e-48
AT1G20920.1  | chr1:7285342-7288842 FORWARD LENGTH=1167           168   2e-42

>AT3G09620.1 | chr3:2949152-2952205 REVERSE LENGTH=990
          Length = 989

 Score =  188 bits (477), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 84/123 (68%), Positives = 101/123 (82%)

Query: 92  ALQAALNIQQNLARIQAHVVPEHYEVELDINDFPQNARWKITHKETLGPIQDWTEAAITT 151
           A+ AA N+QQ LA+IQA  +PEHYE EL+INDFPQNARWK+THKETLGPI +W+ A+ITT
Sbjct: 867 AMIAAANVQQYLAKIQADAIPEHYEAELEINDFPQNARWKVTHKETLGPISEWSGASITT 926

Query: 152 RGTFIPQGKIVGANERKLYLFIEGPTELSVKKAKSELKRVLEDCANHALNLPGSAQTGKY 211
           RG F   G+I G  ERKLYLF+EGPTE+SVK AK+ELKRVLED  N   +LPG AQ+G+Y
Sbjct: 927 RGKFYEAGRIPGPEERKLYLFVEGPTEISVKTAKAELKRVLEDITNQTFSLPGGAQSGRY 986

Query: 212 SVI 214
           SV+
Sbjct: 987 SVL 989



>AT1G20920.1 | chr1:7285342-7288842 FORWARD LENGTH=1167
          Length = 1166

 Score =  168 bits (425), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/118 (71%), Positives = 98/118 (83%), Gaps = 2/118 (1%)

Query: 98   NIQQNLARIQAHVVPEHYEVELDINDFPQNARWKITHKETLGPIQDWTEAAITTRGTFIP 157
            N+Q NLA+IQA  +PEHYE EL+INDFPQNARWK+THKETLGPI +WT AAITTRG F P
Sbjct: 1050 NLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFYP 1109

Query: 158  QGKIVGANERKLYLFIEGPTELSVKKAKSELKRVLEDCANHAL-NLPGSAQTGKYSVI 214
             G+I G  ERKLYLFIEGP+E SVK AK+ELKRVLED  N A+ +LPG A +G+YSV+
Sbjct: 1110 TGRIPGPGERKLYLFIEGPSEKSVKHAKAELKRVLEDITNQAMSSLPGGA-SGRYSVL 1166



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.130    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,140,236
Number of extensions: 105277
Number of successful extensions: 188
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 2
Length of query: 214
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 120
Effective length of database: 8,529,465
Effective search space: 1023535800
Effective search space used: 1023535800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 109 (46.6 bits)