BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0152700 Os08g0152700|AK065015
(446 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G23450.3 | chr5:7905041-7908960 REVERSE LENGTH=779 220 1e-57
AT4G21540.1 | chr4:11459609-11462356 FORWARD LENGTH=486 125 5e-29
AT4G21534.1 | chr4:11456230-11458820 FORWARD LENGTH=482 112 5e-25
AT5G51290.1 | chr5:20844252-20848157 REVERSE LENGTH=609 62 4e-10
>AT5G23450.3 | chr5:7905041-7908960 REVERSE LENGTH=779
Length = 778
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 108/208 (51%), Positives = 141/208 (67%), Gaps = 15/208 (7%)
Query: 99 KVIVILNPNSGFRSSREVFYQKVQPTLELSGFMMQVVETAYAGHAHALASTVDLSTCPXX 158
K++VILNP SG S +VF+ V+P +L+G M+VV+T AGHA LASTVD++ C
Sbjct: 249 KMLVILNPRSGHGRSIKVFHNVVEPIFKLAGIKMEVVKTTKAGHARELASTVDINLCSDG 308
Query: 159 XXXXXXXXXXNE---------------VLNGLLGRDDLEEAIQLPIGIIPAGSENSLVWT 203
NE VLNGLL R + +E + +PIGI+PAGS+NSLVWT
Sbjct: 309 IICVGGDGIINENSLGRLRWIQKTAFDVLNGLLTRSNPKEGVSIPIGIVPAGSDNSLVWT 368
Query: 204 VLGIRDPVSAATTLAKGGITPIDVFSVKRTQAGITHFGLTASYYGFVADVLQLSEKFRLH 263
VLG+RDP+SAA ++ KGG+T DVF+V+ GI HFG+T SYYGFV+DVL+LSEK++
Sbjct: 369 VLGVRDPISAALSIVKGGLTATDVFAVEWIHTGIIHFGMTVSYYGFVSDVLELSEKYQKR 428
Query: 264 FGPFRYVIAGVLKFLSLPQYRFEVNYLP 291
FGP RY +AG LKF+ LP+Y +EV YLP
Sbjct: 429 FGPLRYFVAGFLKFMCLPKYSYEVEYLP 456
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 77/122 (63%), Gaps = 4/122 (3%)
Query: 318 EDNWVTRKGEFLGIFVCNHFCKPAQGLLSPVIAPKAQHNDGSLDLILVHGSGRLRLFCFF 377
ED WV+RKG FLGI VCNH C+ Q S V+AP ++H+DG++D++LVHG GRLRL FF
Sbjct: 654 EDKWVSRKGHFLGIMVCNHACRTVQS--SQVVAPNSEHDDGTMDMLLVHGCGRLRLLRFF 711
Query: 378 IAYQFCWHLLLPYVEYXXXXXXXXRPIGKTHNGCGVDGELILGEGQTEWQCSLLPAQGRL 437
I Q HL LPYVE + TH+ CG+DGEL G E ++LP Q RL
Sbjct: 712 ILLQTGRHLSLPYVECVKVKSVKIKAGKNTHDSCGIDGELFALHG--EVISTMLPEQCRL 769
Query: 438 LG 439
+G
Sbjct: 770 IG 771
>AT4G21540.1 | chr4:11459609-11462356 FORWARD LENGTH=486
Length = 485
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/354 (27%), Positives = 171/354 (48%), Gaps = 34/354 (9%)
Query: 98 RKVIVILNPNSGFRSSREVFYQKVQPTLELSGFMMQVVETAYAGHAHALASTVDLSTCPX 157
+K++V +NP G +++R++F ++V+P E + +++ ET Y HA + ++D+S
Sbjct: 119 KKLLVFVNPFGGKKTARKIFQEEVKPLFEDANIQLEIQETKYQLHAKEIVRSMDVSKYDG 178
Query: 158 XXXXXXXXXXXNEVLNGLLGRDDLEEAIQLPIGIIPAGSENSLVWTVLGIRDPV------ 211
EV+NGLL R+D + AI+LPIG++PAGS N ++ ++L +PV
Sbjct: 179 IVCVSGDGILV-EVVNGLLEREDWKTAIKLPIGMVPAGSGNGMIKSLL---EPVGLPCSA 234
Query: 212 -SAATTLAKGGITPIDVFSVKRTQAGITHFGLTASYYGFVADVLQLSEKFRLHFGPFRYV 270
SA ++ +G +DV ++ +Q F + +G VAD+ SEKFR G R+
Sbjct: 235 TSATISIIRGRTRSLDVATI--SQGTTKFFSVLMLAWGLVADIDIESEKFRW-MGSARFD 291
Query: 271 IAGVLKFLSLPQYRFEVNYLPLSPRRNH---------KLLPVTEKCNDHLAADSSAED-N 320
I G+ + + L QY + ++P ++ K ++K + DS E+ +
Sbjct: 292 IYGLQRIICLRQYHGRILFVPAPGFESYGQRASCSIDKEPSGSDKTLVYQGPDSKLENLD 351
Query: 321 WVTRKGEFLGIFVCNHFCKPAQGLLSPVIAPKAQHNDGSLDLILVHGSGRLRLFCFFIAY 380
W KG F+ +++ N G + + AP A+ +DG LDLI++ +L L
Sbjct: 352 WREMKGPFVSVWLHNV----PWGAENTLAAPDAKFSDGFLDLIVMKDCPKLALLSLMTKL 407
Query: 381 QFCWHLLLPYVEYXXXXXXXXRPIGKTH--NGCGV---DGELILGEGQTEWQCS 429
H+ PY Y P + + G+ DGE +L G+ ++C
Sbjct: 408 SDGTHVQSPYASYLKVKAFVLEPGARIDEPDKEGIIDSDGE-VLARGRKSYKCD 460
>AT4G21534.1 | chr4:11456230-11458820 FORWARD LENGTH=482
Length = 481
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 167/352 (47%), Gaps = 30/352 (8%)
Query: 98 RKVIVILNPNSGFRSSREVFYQKVQPTLELSGFMMQVVETAYAGHAHALASTVDLSTCPX 157
++++V +NP G +S+RE+F ++V+P E + +++ ET Y HA ++D+S
Sbjct: 114 KRLLVFVNPFGGKKSAREIFVKEVKPLFEDADVQLEIQETKYQLHAKEFVKSMDVSKYDG 173
Query: 158 XXXXXXXXXXXNEVLNGLLGRDDLEEAIQLPIGIIPAGSENSLVWTVL---GIRDPVSAA 214
EV+NGLL R D A++LPIG++PAG+ N ++ ++L G+R ++A
Sbjct: 174 IVCVSGDGILV-EVVNGLLERADWRNALKLPIGMVPAGTGNGMIKSLLDTVGLRCCANSA 232
Query: 215 T-TLAKGGITPIDVFSVKRTQAGITHFGLTASYYGFVADVLQLSEKFRLHFGPFRYVIAG 273
T ++ +G +DV ++ Q F + +G +AD+ SEKFR G R
Sbjct: 233 TISIIRGHKRSVDVATI--AQGNTKFFSVLMLAWGLIADIDIESEKFR-WMGSARIDFYA 289
Query: 274 VLKFLSLPQYRFEVNYLPLSPRRNHKLLP----------VTEKCNDHLAADSSAED-NWV 322
+ + + L +Y + +LP +P P V++K + ++ ED W
Sbjct: 290 LQRIICLRRYNGRILFLP-APGFEGYGQPASCSLYQEPHVSDKEVGYQGPETKFEDLEWR 348
Query: 323 TRKGEFLGIFVCNHFCKPAQGLLSPVIAPKAQHNDGSLDLILVHGSGRLRLFCFFIAYQF 382
KG F+ I++ N G + + AP A+ +DG LDLI++ +L L
Sbjct: 349 EMKGPFVTIWLHN----VPWGSENTLTAPAAKFSDGYLDLIVLKNCPKLVLLSLMRQTSS 404
Query: 383 CWHLLLPYVEYXXXXXXXXRP--IGKTHNGCGV---DGELILGEGQTEWQCS 429
H+ PY+ Y P + + G+ DGE +L G+ ++C
Sbjct: 405 GTHVESPYIVYIKVKAFVLEPGALVDEPDKEGIIDSDGE-VLARGKRTYKCD 455
>AT5G51290.1 | chr5:20844252-20848157 REVERSE LENGTH=609
Length = 608
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 90/237 (37%), Gaps = 54/237 (22%)
Query: 189 IGIIPAGSENSLVWTVLGIRDPVSAATTLAKGGITPIDVFSVKRTQAGIT-------HFG 241
G+IPAGS +++V G RDPV++A + G +D V R + T +
Sbjct: 322 FGLIPAGSTDAIVMCTTGARDPVTSALHIILGRKLFLDAMQVVRWKTASTSTIEPYIRYA 381
Query: 242 LTASYYGFVADVLQLSEKFRLHFGPFRYVIAGVLKFLSLPQYRFEVNYLPLSPRRNHKLL 301
+ + YGF DV+ SEK+R GP RY G FL Y EV + + L
Sbjct: 382 ASFAGYGFYGDVISESEKYRW-MGPKRYDYVGTKIFLKHRSYEAEVMFEEAESENSKASL 440
Query: 302 PVTEK---------------------CNDHLAADSSA--------EDNWVTRKGEFLGI- 331
K CN + +S++ + W KG FL I
Sbjct: 441 HTRSKTWPFRNTTRSEKILCRANCKICNSKVGWNSASTTLNPCPEKTRWCRTKGRFLSIG 500
Query: 332 --FVCNHFCKPAQGLLSPVIAPKAQHNDGSLDLILVHGSGRLRLFCFFIAYQFCWHL 386
+ N + GL+ A +DG L LIL+ R + + WHL
Sbjct: 501 AAVMSNRNERAPDGLVV-----DAHLSDGFLHLILIKDCSRPK---------YLWHL 543
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,322,759
Number of extensions: 370187
Number of successful extensions: 638
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 629
Number of HSP's successfully gapped: 5
Length of query: 446
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 344
Effective length of database: 8,310,137
Effective search space: 2858687128
Effective search space used: 2858687128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)