BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0143700 Os08g0143700|AK106434
(350 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G51180.1 | chr5:20797360-20799929 FORWARD LENGTH=358 436 e-122
AT4G25770.1 | chr4:13117821-13119982 REVERSE LENGTH=419 357 8e-99
AT1G10040.1 | chr1:3276108-3278464 REVERSE LENGTH=413 343 9e-95
AT1G29120.5 | chr1:10174481-10178143 FORWARD LENGTH=457 268 4e-72
>AT5G51180.1 | chr5:20797360-20799929 FORWARD LENGTH=358
Length = 357
Score = 436 bits (1120), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/354 (61%), Positives = 269/354 (75%), Gaps = 14/354 (3%)
Query: 7 DEAAVLRAEESASGGVDVWSDAVS-SHDPDHLLVMVHGILGSNADWQYAANEFVKQLPDD 65
+E + +AE S G +DVWS S S DHL+VMVHGILGS DW++ A +FVK++PD
Sbjct: 6 EENGLCKAE-SVDGSLDVWSCQNSDSSSADHLVVMVHGILGSTDDWKFGAEQFVKKMPDK 64
Query: 66 VIVHCSEKNINTLTLEGVDVMGERLADEVIDVIIRKPELTKISFLAHSVGGLAARYAIAK 125
V VHCSEKN++ LTL+GVDVMGERLA EV+D+I RKP + KISF+AHS+GGLAARYAI K
Sbjct: 65 VFVHCSEKNVSALTLDGVDVMGERLAAEVLDIIQRKPNICKISFVAHSLGGLAARYAIGK 124
Query: 126 LYRHP---------SDTSKSETKGTIGGLEAMNFITVATPHLGSRGNNQVPLLFGSIAME 176
LY+ +D+S+ KGTI GLEAMNFITVATPHLGS GN QVP LFG ++E
Sbjct: 125 LYKPANQEDVKDSVADSSQETPKGTICGLEAMNFITVATPHLGSMGNKQVPFLFGFSSIE 184
Query: 177 NFASRVVHWIFRRTGKHLFLTDDDEGEPPLLQRMAEDYGDLYFISALHAFRRRVAYANAD 236
A ++HWIF+RTG+HLFL D++EG+PPLL+RM ED D +FISAL AF+RRVAY+N
Sbjct: 185 KVAGLIIHWIFKRTGRHLFLKDEEEGKPPLLRRMVEDTDDCHFISALRAFKRRVAYSNVG 244
Query: 237 CDHIVGWRTSSIRRKTELPKWEESISEKYPHIVHEEYSEELGDETCQNSATVCDSDILEE 296
DH+VGW+T+SIRR +ELPKWE+S++EKYPHIV+EE + E SD +EE
Sbjct: 245 HDHVVGWKTASIRRDSELPKWEDSLNEKYPHIVYEELCKACDMEDIPEGEN--HSDDIEE 302
Query: 297 KMVTGLRRVSWEKVDVSFHTSMQRFAAHSIIQVKYQFMN-EGADVIQHIIDHFQ 349
+M+ GL VSWEKVDVSFH+S QRFAAHS+IQVK + M+ EGADVI+HIIDHF
Sbjct: 303 EMIKGLSSVSWEKVDVSFHSSRQRFAAHSVIQVKNEDMHIEGADVIEHIIDHFH 356
>AT4G25770.1 | chr4:13117821-13119982 REVERSE LENGTH=419
Length = 418
Score = 357 bits (915), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 193/363 (53%), Positives = 244/363 (67%), Gaps = 17/363 (4%)
Query: 1 MGSIGGDEAAVLRAEESASGGVDVWSDAV--SSHDPDHLLVMVHGILGSNADWQYAANEF 58
+G + + E +GG D + V S+ PDHL+VMV+GI+GS ADW+YAA +F
Sbjct: 56 IGCFAANRSKRELTTEIDNGGEDFFDADVMESAEKPDHLVVMVNGIVGSAADWKYAAEQF 115
Query: 59 VKQLPDDVIVHCSEKNINTLTLEGVDVMGERLADEVIDVIIRKPELTKISFLAHSVGGLA 118
VK+ PD V+VH SE N TLT +GVD MGERLA+EV+ V+ + L KISF+AHS+GGL
Sbjct: 116 VKKFPDKVLVHRSESNSATLTFDGVDKMGERLANEVLGVVKHRSGLKKISFVAHSLGGLV 175
Query: 119 ARYAIAKLYRHPSDT--------SKSETKGTIGGLEAMNFITVATPHLGSRGNNQVPLLF 170
ARYAI KLY P + KS G I GLE MNFIT ATPHLGSRG+ Q P+L
Sbjct: 176 ARYAIGKLYEQPGEVDSLDSPSKEKSARGGEIAGLEPMNFITFATPHLGSRGHRQFPILC 235
Query: 171 GSIAMENFASRVVHWIFRRTGKHLFLTDDDEGEPPLLQRMAEDYGDLYFISALHAFRRRV 230
G +E AS+ H RTGKHLFL D+D+G PLL RMA D DL FISAL+AF+RRV
Sbjct: 236 GLPFLERTASQTAHLAAGRTGKHLFLVDNDDGNAPLLIRMATDSDDLKFISALNAFKRRV 295
Query: 231 AYANADCDHIVGWRTSSIRRKTELPKWE-ESISEKYPHIVHEEYSEELGDETCQNSATVC 289
AYAN + D +VGWRTSSIRR ELPK + YPHIV+ E + + +CQ+++TV
Sbjct: 296 AYANVNFDSMVGWRTSSIRRPNELPKPNLLATDPNYPHIVYVERG-NVDNGSCQSTSTVV 354
Query: 290 ---DSDILEEKMVTGLRRVSWEKVDVSFHTSMQRFAAHSIIQVK-YQFMNEGADVIQHII 345
D+D LEE+M+ GL ++SWE+VDVSFH S QR+ AHS IQVK Y ++G DV+ H++
Sbjct: 355 TEQDTD-LEEEMIHGLSQLSWERVDVSFHNSKQRYVAHSTIQVKTYWLHSDGKDVVFHMM 413
Query: 346 DHF 348
DHF
Sbjct: 414 DHF 416
>AT1G10040.1 | chr1:3276108-3278464 REVERSE LENGTH=413
Length = 412
Score = 343 bits (879), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 184/359 (51%), Positives = 239/359 (66%), Gaps = 20/359 (5%)
Query: 10 AVLRAEESASGGVDVWSDAVSSH-DPDHLLVMVHGILGSNADWQYAANEFVKQLPDDVIV 68
LRAE SG VD+ D +P HL+VMV+G++GS +W++AA + +K+ P D++V
Sbjct: 54 GCLRAESDESGNVDLTVDFPGERTEPTHLVVMVNGLIGSAQNWRFAAKQMLKKYPQDLLV 113
Query: 69 HCSEKNINTLTLEGVDVMGERLADEVIDVIIRKPELTKISFLAHSVGGLAARYAIAKLYR 128
HCS++N +T T +GVDVMGERLA+EV VI R P L KISF+ HS+GGL ARYAI +LY
Sbjct: 114 HCSKRNHSTQTFDGVDVMGERLAEEVRSVIKRHPSLQKISFVGHSLGGLIARYAIGRLYE 173
Query: 129 --------HPSD-----TSKSETKGTIGGLEAMNFITVATPHLGSRGNNQVPLLFGSIAM 175
H SD S E K I GLE + FIT ATPHLGSRG+ QVPL GS +
Sbjct: 174 QESREELPHNSDDIGDKCSIEEPKARIAGLEPVYFITSATPHLGSRGHKQVPLFSGSYTL 233
Query: 176 ENFASRVVHWIFRRTGKHLFLTDDDEGEPPLLQRMAEDYGDLYFISALHAFRRRVAYANA 235
E A+R + +TGKHLFL D D G+PPLL RM +D DL FISAL F+RR+AYAN
Sbjct: 234 ERLATR-MSGCLGKTGKHLFLADSDGGKPPLLLRMVKDSRDLKFISALQCFKRRIAYANT 292
Query: 236 DCDHIVGWRTSSIRRKTELPKWEES-ISEKYPHIVHEEYSEELGDETCQNSATVCD---S 291
DH+VGW TSSIRR ELPK + ++EKYPHIV+ E + + +S T D +
Sbjct: 293 SFDHLVGWSTSSIRRHNELPKLQRGPVNEKYPHIVNVEAPDTASNYEEDHSRTKADRFKN 352
Query: 292 DILEEKMVTGLRRVSWEKVDVSFHTSMQRFAAHSIIQVKYQFMNE-GADVIQHIIDHFQ 349
+EE+M+ L ++SWE+VDVSF ++QRF AH+ IQVK + +N GADVIQH+ID+F+
Sbjct: 353 LDMEEEMIRELTKLSWERVDVSFRGTLQRFLAHNTIQVKTKMINSAGADVIQHMIDNFE 411
>AT1G29120.5 | chr1:10174481-10178143 FORWARD LENGTH=457
Length = 456
Score = 268 bits (684), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 151/352 (42%), Positives = 208/352 (59%), Gaps = 29/352 (8%)
Query: 27 DAVSSHDPDHLLVMVHGILGSNADWQYAANEFVKQLPDDVIVHCSEKNINTLTLEGVDVM 86
D+ ++PDHLLV+VHGIL S +DW Y E ++L +++ S N T T G+D
Sbjct: 93 DSDDKNEPDHLLVLVHGILASPSDWLYVEAELKRRLGRRFLIYASSSNTFTKTFGGIDGA 152
Query: 87 GERLADEVIDVIIRKPELTKISFLAHSVGGLAARYAIAKLYR----HPSDTSKSET---- 138
G+RLA+EV V+ + L KISFLAHS+GGL +R+A+A LY SD + S++
Sbjct: 153 GKRLAEEVRQVVQKSKSLKKISFLAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSN 212
Query: 139 --KGTIGGLEAMNFITVATPHLGSRGNNQVPLLFGSIAMENFASRVVHWIFRRTGKHLFL 196
+G I GLE +NFIT+ATPHLG RG Q+P L G +E A+ + + RTG LFL
Sbjct: 213 LLRGRIAGLEPINFITLATPHLGVRGRKQLPFLLGVPILEKLAAPIAPFFVGRTGSQLFL 272
Query: 197 TDDDEGEPPLLQRMAEDYGDLYFISALHAFRRRVAYANADCD-HIVGWRTSSIRRKTELP 255
TD +PPLL RMA D DL F+SAL AFR R+ YAN D +VGWRTSSIRR+TEL
Sbjct: 273 TDGKADKPPLLLRMASDGEDLKFLSALGAFRSRIIYANVSYDLDMVGWRTSSIRRETELI 332
Query: 256 KWEESISEKYPHIVHEEYSEELGDETC-------------QNSATVCDS----DILEEKM 298
K + Y H+V EY + + Q+S + ++ +I+EE+M
Sbjct: 333 KPSRRSLDGYKHVVDVEYCPPVSSDGAHFPPEAAKAKEAAQSSPSPQNTLEYHEIVEEEM 392
Query: 299 VTGLRRVSWEKVDVSFHTSMQRFAAHSIIQVKYQ-FMNEGADVIQHIIDHFQ 349
+ GL+R+ W+KVDVSFH++ + AH+ I VK + GA VI H+ D +
Sbjct: 393 IRGLQRLGWKKVDVSFHSTFWPYLAHNNIHVKSERLYKAGAGVIAHVADSIK 444
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,777,041
Number of extensions: 326120
Number of successful extensions: 919
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 906
Number of HSP's successfully gapped: 4
Length of query: 350
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 251
Effective length of database: 8,392,385
Effective search space: 2106488635
Effective search space used: 2106488635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)