BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0141400 Os08g0141400|AK072710
(246 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G21490.1 | chr4:11436495-11439326 REVERSE LENGTH=581 382 e-107
AT4G05020.2 | chr4:2572752-2576222 FORWARD LENGTH=620 372 e-103
AT2G20800.1 | chr2:8953252-8955699 REVERSE LENGTH=583 369 e-103
AT4G28220.1 | chr4:13993078-13995651 FORWARD LENGTH=572 338 1e-93
AT1G07180.1 | chr1:2204414-2206773 FORWARD LENGTH=511 74 9e-14
AT2G29990.1 | chr2:12793562-12795913 REVERSE LENGTH=509 66 2e-11
>AT4G21490.1 | chr4:11436495-11439326 REVERSE LENGTH=581
Length = 580
Score = 382 bits (981), Expect = e-107, Method: Compositional matrix adjust.
Identities = 178/247 (72%), Positives = 209/247 (84%), Gaps = 1/247 (0%)
Query: 1 VIHLILRLHLQGKRRVLATDEWLRVRECDGVYAVGDCATINQRRVMDDISEIFRVADKDN 60
VI ++ QG RR LATDEWLRV CD +YA+GDCATINQR+VM+DI+ IF+ ADK+N
Sbjct: 334 VIKDFMKQIGQGNRRALATDEWLRVEGCDNIYALGDCATINQRKVMEDIAAIFKKADKEN 393
Query: 61 SGTLTVKEIQDVLDDIYVRYPQVELYLKSRQMNGIADLVRTAKG-DAEKESVELNIEEFK 119
SGTLT+KE +V+ DI RYPQVELYLKS+ M+GI DL++ A+ + +SVEL+IEE K
Sbjct: 394 SGTLTMKEFHEVMSDICDRYPQVELYLKSKGMHGITDLLKQAQAENGSNKSVELDIEELK 453
Query: 120 KALSLVDSQVKNLPATAQVASQQGQYLARCFNKMKDAEENPEGPIRIRGEGRHRFRPFRY 179
AL VDSQVK LPAT QVA+QQG YLA+CF++M+ E+NPEGPIRIRGEGRHRFRPFRY
Sbjct: 454 SALCQVDSQVKLLPATGQVAAQQGTYLAKCFDRMEVCEKNPEGPIRIRGEGRHRFRPFRY 513
Query: 180 RHLGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSVYATKQISWRTRALVISDWSRRFIF 239
RHLGQFAPLGGEQTAAQLPGDW+SIGHS+QWLWYSVYA+KQ+SWRTR LV+SDW RRFIF
Sbjct: 514 RHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRVLVVSDWMRRFIF 573
Query: 240 GRDSSCI 246
GRDSS I
Sbjct: 574 GRDSSRI 580
>AT4G05020.2 | chr4:2572752-2576222 FORWARD LENGTH=620
Length = 619
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/284 (63%), Positives = 212/284 (74%), Gaps = 38/284 (13%)
Query: 1 VIHLILRLHLQGKRRVLATDEWLRVRECDGVYAVGDCATINQRRVMDDISEIFRVADKDN 60
VI ++ QG RR LATDEWLRV D +YA+GDCATINQR+VM+D+S IF ADKD
Sbjct: 336 VIKDFMKQIGQGNRRALATDEWLRVEGTDNIYALGDCATINQRKVMEDVSAIFSKADKDK 395
Query: 61 SGTLTVKEIQDVLDDIYVRYPQVELYLKSRQMNGIADLVRTAKG-DAEKESVELNIEEFK 119
SGTLT+KE Q+ +DDI VRYPQVELYLKS++M GIADL++ A+ D K ++EL IEEFK
Sbjct: 396 SGTLTLKEFQEAMDDICVRYPQVELYLKSKRMRGIADLLKEAETDDVSKNNIELKIEEFK 455
Query: 120 KALSLVDSQVKNLPATAQVASQQGQYLARCFNKMKDAEENPEGPIRIRGEGRHRFRPF-- 177
ALS VDSQVK LPATAQVA+QQG YLA+CF++M++ E++PEGPIR+RGEGRHRFRPF
Sbjct: 456 SALSQVDSQVKFLPATAQVAAQQGAYLAKCFDRMEECEKSPEGPIRMRGEGRHRFRPFRI 515
Query: 178 -----------------------------------RYRHLGQFAPLGGEQTAAQLPGDWI 202
RYRHLGQFAPLGGEQTAAQLPGDW+
Sbjct: 516 WKLRGISKTLSQDTTESCALDHKGVGKMELIPYIIRYRHLGQFAPLGGEQTAAQLPGDWV 575
Query: 203 SIGHSTQWLWYSVYATKQISWRTRALVISDWSRRFIFGRDSSCI 246
SIGHS+QWLWYSVYA+KQ+SWRTR LV+SDW RRFIFGRDSS I
Sbjct: 576 SIGHSSQWLWYSVYASKQVSWRTRVLVVSDWMRRFIFGRDSSSI 619
>AT2G20800.1 | chr2:8953252-8955699 REVERSE LENGTH=583
Length = 582
Score = 369 bits (947), Expect = e-103, Method: Compositional matrix adjust.
Identities = 169/236 (71%), Positives = 200/236 (84%), Gaps = 4/236 (1%)
Query: 11 QGKRRVLATDEWLRVRECDGVYAVGDCATINQRRVMDDISEIFRVADKDNSGTLTVKEIQ 70
QG+RRVLATDEWLRV CDGVYA+GD ATINQRRVM+DI+ IF ADK N+GTL K+
Sbjct: 351 QGQRRVLATDEWLRVEGCDGVYALGDTATINQRRVMEDIAAIFNKADKGNTGTLKKKDFN 410
Query: 71 DVLDDIYVRYPQVELYLKSRQMNGIADLVRTAKGDAEKESVELNIEEFKKALSLVDSQVK 130
V+ DI RYPQVELYLK ++ IA+L+++A G E ++NIE+FK+ALS VDSQ+K
Sbjct: 411 SVVKDICQRYPQVELYLKKNKLKNIANLLKSANG----EDTQVNIEKFKQALSEVDSQMK 466
Query: 131 NLPATAQVASQQGQYLARCFNKMKDAEENPEGPIRIRGEGRHRFRPFRYRHLGQFAPLGG 190
NLPATAQVASQQG+YLA+CFNKM+ E+ PEGP+R RGEGRHRF+PFRYRH G FAPLGG
Sbjct: 467 NLPATAQVASQQGKYLAKCFNKMEKCEKKPEGPLRFRGEGRHRFQPFRYRHFGSFAPLGG 526
Query: 191 EQTAAQLPGDWISIGHSTQWLWYSVYATKQISWRTRALVISDWSRRFIFGRDSSCI 246
EQTAA+LPGDW+SIGHS+QWLWYSVYA+K +SWRTR LVISDW+RRF+FGRDSS I
Sbjct: 527 EQTAAELPGDWVSIGHSSQWLWYSVYASKLVSWRTRMLVISDWTRRFVFGRDSSSI 582
>AT4G28220.1 | chr4:13993078-13995651 FORWARD LENGTH=572
Length = 571
Score = 338 bits (868), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 155/236 (65%), Positives = 194/236 (82%), Gaps = 3/236 (1%)
Query: 11 QGKRRVLATDEWLRVRECDGVYAVGDCATINQRRVMDDISEIFRVADKDNSGTLTVKEIQ 70
QG RR +AT+EWL+V C+ VYAVGDCA+I QR+++ DI+ IF+ AD DNSGTLT++E++
Sbjct: 339 QGGRRAVATNEWLQVTGCENVYAVGDCASIAQRKILGDIANIFKAADADNSGTLTMEELE 398
Query: 71 DVLDDIYVRYPQVELYLKSRQMNGIADLVRTAKGDAEKESVELNIEEFKKALSLVDSQVK 130
V+DDI VRYPQVELYLKS+ M I DL+ ++G+A KE ++IE FK ALS DSQ+K
Sbjct: 399 GVVDDIIVRYPQVELYLKSKHMRHINDLLADSEGNARKE---VDIEAFKLALSEADSQMK 455
Query: 131 NLPATAQVASQQGQYLARCFNKMKDAEENPEGPIRIRGEGRHRFRPFRYRHLGQFAPLGG 190
LPATAQVA+QQG YLA+CFN+M+ +E PEGP R R G H+FRPF+Y+H GQFAPLGG
Sbjct: 456 TLPATAQVAAQQGAYLAKCFNRMEQCKELPEGPKRFRTGGHHQFRPFQYKHFGQFAPLGG 515
Query: 191 EQTAAQLPGDWISIGHSTQWLWYSVYATKQISWRTRALVISDWSRRFIFGRDSSCI 246
+Q AA+LPGDW+S G S QWLWYSVYA+KQ+SWRTRALV+SDW+RR+IFGRDSS I
Sbjct: 516 DQAAAELPGDWVSAGKSAQWLWYSVYASKQVSWRTRALVVSDWTRRYIFGRDSSRI 571
>AT1G07180.1 | chr1:2204414-2206773 FORWARD LENGTH=511
Length = 510
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 59/121 (48%), Gaps = 9/121 (7%)
Query: 131 NLPATAQVASQQGQYLARCFNKMKDAEENPEGPIRIRGEGRHRFRPFRYRHLGQFAPLGG 190
LPA AQVA ++G+YLA FN M A + G PF Y+HLG A +G
Sbjct: 394 TLPALAQVAEREGKYLANLFNVMGKAGGGRANSAKEMELGE----PFVYKHLGSMATIGR 449
Query: 191 EQTAAQL----PGDWISIGHSTQW-LWYSVYATKQISWRTRALVISDWSRRFIFGRDSSC 245
+ L G IS+ W +W S Y T+ +SWR R V +W F+FGRD S
Sbjct: 450 YKALVDLRESKEGKGISMAGFLSWFIWRSAYLTRVVSWRNRFYVAINWLTTFVFGRDISR 509
Query: 246 I 246
I
Sbjct: 510 I 510
>AT2G29990.1 | chr2:12793562-12795913 REVERSE LENGTH=509
Length = 508
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 131 NLPATAQVASQQGQYLARCFN---KMKDAEENPEGPIRIRGEGRHRFRPFRYRHLGQFAP 187
LPA AQVA ++G+YLA N K N I + PF Y+HLG A
Sbjct: 392 TLPALAQVAEREGKYLANLLNAIGKGNGGRANSAKEIELG-------VPFVYKHLGSMAT 444
Query: 188 LGGEQTAAQL----PGDWISIGHSTQW-LWYSVYATKQISWRTRALVISDWSRRFIFGRD 242
+G + L IS+ W +W S Y T+ ISWR R V +W F+FGRD
Sbjct: 445 IGRYKALVDLRESKDAKGISMTGFVSWFIWRSAYLTRVISWRNRFYVAINWFTTFVFGRD 504
Query: 243 SSCI 246
S I
Sbjct: 505 ISRI 508
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,215,775
Number of extensions: 205826
Number of successful extensions: 699
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 693
Number of HSP's successfully gapped: 7
Length of query: 246
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 150
Effective length of database: 8,474,633
Effective search space: 1271194950
Effective search space used: 1271194950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)