BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0127700 Os08g0127700|AK121348
(536 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G65660.1 | chr1:24418295-24421231 REVERSE LENGTH=536 770 0.0
AT4G37120.1 | chr4:17486679-17489123 FORWARD LENGTH=537 723 0.0
AT3G45950.1 | chr3:16889461-16890618 REVERSE LENGTH=386 445 e-125
>AT1G65660.1 | chr1:24418295-24421231 REVERSE LENGTH=536
Length = 535
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/535 (69%), Positives = 413/535 (77%)
Query: 1 MATASVSFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKP 60
MATASV+FKSREDHRKQ+ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN++KP
Sbjct: 1 MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP 60
Query: 61 SLKHQRNWKSDPNYTKSWYDRGAKLFQANKYRKGACENCGAMTHDKKSCMERPRSVGAKW 120
SLKHQR WKSDPNYTKSWYDRGAK+FQA KYRKGAC+NCGAMTH K+CM+RPR +GAK+
Sbjct: 61 SLKHQRKWKSDPNYTKSWYDRGAKIFQAEKYRKGACQNCGAMTHTAKACMDRPRKIGAKY 120
Query: 121 TNINIAPDEKVESFELDYDGKRDRWNGYDPSTYTRVIADYEAREEARXXXXXXXXXXXXX 180
TN+NIAPDEK+ESFELDYDGKRDRWNGYDPSTY RVI YEA+E+AR
Sbjct: 121 TNMNIAPDEKIESFELDYDGKRDRWNGYDPSTYHRVIDLYEAKEDARKKYLKEQQLKKLE 180
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXAKVDESAQMDFAKVEKRVRXXXXXXXXXVRNLRI 240
AKVDES QMDFAKVEKRVR VRNLRI
Sbjct: 181 EKNNNEKGDDANSDGEEDEDDLRVDEAKVDESRQMDFAKVEKRVRTTGGGSTGTVRNLRI 240
Query: 241 REDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNDKFYVGDNQNRLSGQALEFKQLNI 300
REDTAKYLLNLDVNSA+YDPKTRSMREDPLPDADPNDKFY+GDNQ R SGQALEFKQLNI
Sbjct: 241 REDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNDKFYLGDNQYRNSGQALEFKQLNI 300
Query: 301 HAWEAFDKGQDIHMQAAPSQAELXXXXXXXXXXXXXXXXXXXXMEKYGNAASEEPIPREL 360
H+WEAFDKGQD+HMQAAPSQAEL M+KYGNAA+E+ IP EL
Sbjct: 301 HSWEAFDKGQDMHMQAAPSQAELLYKSFQVAKEKLKSQTKDTIMDKYGNAATEDEIPMEL 360
Query: 361 LLGQSEKEIEYDRTGRIIKGQDVALPKSKYEEDVFINNHTTVWGSWWKDHQWGYKCCKQT 420
LLGQSE+++EYDR GRIIKGQ+V LPKSKYEEDV NNHT+VWGS+WKDHQWGYKCC+Q
Sbjct: 361 LLGQSERQVEYDRAGRIIKGQEVILPKSKYEEDVHANNHTSVWGSYWKDHQWGYKCCQQI 420
Query: 421 IRNSYCTGLAGIEAAEASADLMKANMARKEAAEDEPVRHEEKRLATWGTDVPNDIVXXXX 480
IRNSYCTG AGIEAAEA+ DLMKAN+ARKEA E+ P + EEKR+A+WGTD+P D+
Sbjct: 421 IRNSYCTGSAGIEAAEAALDLMKANIARKEATEESPKKVEEKRMASWGTDIPEDLELNEE 480
Query: 481 XXXXXXXXXGAXXXXXXXXXXXXYNVKWNDEVTAEDMEAYRMKRIHHDDPMRDFL 535
YNVK+N++VT E+MEAYRMKR+HH+DPM+DFL
Sbjct: 481 ALANALKKEDLSRREEKDERKRKYNVKYNNDVTPEEMEAYRMKRVHHEDPMKDFL 535
>AT4G37120.1 | chr4:17486679-17489123 FORWARD LENGTH=537
Length = 536
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/534 (65%), Positives = 399/534 (74%)
Query: 1 MATASVSFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKP 60
MATASV+FKSREDHRK+LELEEARKAGLAPAEVDEDGKEINPHIP+YMS APWYL +++P
Sbjct: 1 MATASVAFKSREDHRKKLELEEARKAGLAPAEVDEDGKEINPHIPEYMSKAPWYLKSEQP 60
Query: 61 SLKHQRNWKSDPNYTKSWYDRGAKLFQANKYRKGACENCGAMTHDKKSCMERPRSVGAKW 120
SLKHQ+NWK +P K WYDRG K++QA +YRKGAC NCGAMTH K+CM+RPR +GAK+
Sbjct: 61 SLKHQKNWKIEPEPKKIWYDRGKKIYQAEQYRKGACINCGAMTHSSKACMDRPRKIGAKY 120
Query: 121 TNINIAPDEKVESFELDYDGKRDRWNGYDPSTYTRVIADYEAREEARXXXXXXXXXXXXX 180
TN+NIA DEK+ESFELDYDGKRDRWNGYD STY V+ Y+A+EEAR
Sbjct: 121 TNMNIAADEKIESFELDYDGKRDRWNGYDTSTYRHVVDRYDAKEEARKKYLKEQQLKKLE 180
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXAKVDESAQMDFAKVEKRVRXXXXXXXXXVRNLRI 240
AKVDES QMDFAKVEKRVR VRNLRI
Sbjct: 181 EKNNNENGDDATSDGEEDLDDLRVDEAKVDESRQMDFAKVEKRVRTTGGGSTGTVRNLRI 240
Query: 241 REDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNDKFYVGDNQNRLSGQALEFKQLNI 300
REDTAKYLLNLDVNSA+YDPKTRSMREDPLPDADPN+KFY+GDNQ R SGQALEFKQ+NI
Sbjct: 241 REDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQALEFKQINI 300
Query: 301 HAWEAFDKGQDIHMQAAPSQAELXXXXXXXXXXXXXXXXXXXXMEKYGNAASEEPIPREL 360
H+ EAFDKG D+HMQAAPSQAEL MEKYGNAA+E IP EL
Sbjct: 301 HSCEAFDKGHDMHMQAAPSQAELLYKNFKVAKEKLKTQTKDTIMEKYGNAATEGEIPMEL 360
Query: 361 LLGQSEKEIEYDRTGRIIKGQDVALPKSKYEEDVFINNHTTVWGSWWKDHQWGYKCCKQT 420
LLGQSE++IEYDR GRI+KGQ+V +PKSKYEEDV NNHT+VWGSWWKDHQWGYKCC+QT
Sbjct: 361 LLGQSERQIEYDRAGRIMKGQEVIIPKSKYEEDVHANNHTSVWGSWWKDHQWGYKCCQQT 420
Query: 421 IRNSYCTGLAGIEAAEASADLMKANMARKEAAEDEPVRHEEKRLATWGTDVPNDIVXXXX 480
IRNSYCTG AGIEAAEAS DLMKAN+ARKEA+++ P + EEK++ATWGTD+P D+
Sbjct: 421 IRNSYCTGSAGIEAAEASIDLMKANIARKEASKESPKKVEEKKMATWGTDIPEDLELNEE 480
Query: 481 XXXXXXXXXGAXXXXXXXXXXXXYNVKWNDEVTAEDMEAYRMKRIHHDDPMRDF 534
YNV + ++VT+E+MEAYRMKR+HH+DPMR+F
Sbjct: 481 ALANALKKEDLSRREEKDERKRKYNVNYTNDVTSEEMEAYRMKRVHHEDPMRNF 534
>AT3G45950.1 | chr3:16889461-16890618 REVERSE LENGTH=386
Length = 385
Score = 445 bits (1144), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/366 (61%), Positives = 260/366 (71%), Gaps = 10/366 (2%)
Query: 1 MATASVSFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKP 60
MATASV+FKSR+DHRKQ ELEEARKAGLAPAEVDE GKEIN HIP+Y++ P Y ++KP
Sbjct: 1 MATASVAFKSRKDHRKQKELEEARKAGLAPAEVDEGGKEINLHIPKYLTIPPLYAKSEKP 60
Query: 61 SLKHQRNWKSDPNYTKSWYDRGAKLFQANKYRKGACENCGAMTHDKKSCMERPRSVGAKW 120
SLKHQ+NWK+ P T S+YDRGAK +QA KYRKGAC+NCGAMTHD K+CMERPR VGAK+
Sbjct: 61 SLKHQKNWKTKPVSTTSYYDRGAKTYQAEKYRKGACQNCGAMTHDVKTCMERPRKVGAKY 120
Query: 121 TNINIAPDEKVESFELDYDGKRDRWNGYDPSTYTRVIADYEAREEARXXXXXXXXXXXXX 180
T+ NIAPDEK+ES E DYDGKRDRWNGYDPS+Y V +EA+E AR
Sbjct: 121 TDKNIAPDEKIESLEFDYDGKRDRWNGYDPSSYCHVRDRHEAKENAR----------EKY 170
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXAKVDESAQMDFAKVEKRVRXXXXXXXXXVRNLRI 240
AK+DES Q+DFAKV+KRVR VRNLRI
Sbjct: 171 LNEQQLIAKLEEKNIDGEEEDLRVDEAKIDESMQVDFAKVKKRVRTTDGGSKGTVRNLRI 230
Query: 241 REDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNDKFYVGDNQNRLSGQALEFKQLNI 300
RED AKYLLNLDVNSAYYDPK+RSMREDPLP DPN+KF + DNQ R SGQA+EFKQ N+
Sbjct: 231 REDPAKYLLNLDVNSAYYDPKSRSMREDPLPYTDPNEKFCLRDNQYRNSGQAIEFKQQNM 290
Query: 301 HAWEAFDKGQDIHMQAAPSQAELXXXXXXXXXXXXXXXXXXXXMEKYGNAASEEPIPREL 360
++ EAFDKGQDIHMQAAPSQAEL + KYG+AA+++ IP EL
Sbjct: 291 YSCEAFDKGQDIHMQAAPSQAELCYKRVKIAKEKLNSQRKDAIIAKYGDAAAKDDIPMEL 350
Query: 361 LLGQSE 366
LLGQS+
Sbjct: 351 LLGQSK 356
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.130 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,245,044
Number of extensions: 401979
Number of successful extensions: 697
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 692
Number of HSP's successfully gapped: 6
Length of query: 536
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 433
Effective length of database: 8,282,721
Effective search space: 3586418193
Effective search space used: 3586418193
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 114 (48.5 bits)