BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0119500 Os08g0119500|J080315K03
(121 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G24480.1 | chr1:8676440-8677159 REVERSE LENGTH=240 181 6e-47
AT4G24805.1 | chr4:12785315-12786058 FORWARD LENGTH=248 176 2e-45
AT5G01710.1 | chr5:263709-265250 REVERSE LENGTH=514 74 1e-14
AT2G16030.1 | chr2:6974196-6974891 REVERSE LENGTH=232 70 3e-13
AT4G26730.1 | chr4:13472579-13473309 FORWARD LENGTH=209 52 1e-07
>AT1G24480.1 | chr1:8676440-8677159 REVERSE LENGTH=240
Length = 239
Score = 181 bits (460), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 86/120 (71%), Positives = 98/120 (81%)
Query: 1 VGVRDAVGIDLAPAPPLVVRGDFHAQPFANDTFDFEFSNVFDHALYPGRFVAEIERTLRP 60
VGV D+VG+DL P PPLVV+GDFH QPF ++TFDFEFSNVFDHALYP +FV EIERTLRP
Sbjct: 114 VGVNDSVGMDLVPYPPLVVKGDFHHQPFDDETFDFEFSNVFDHALYPDKFVGEIERTLRP 173
Query: 61 GGVAVLHVAVHRRGDKYSANDLLDVHGLVGLFRRSDVVRISKVDAFGLDTEVILRKKRSS 120
GG+ VLHVA+ R DKYSANDL V LV LFR+S+VV + VD FGLDTEV+ RKKR S
Sbjct: 174 GGLCVLHVALSTRSDKYSANDLFSVEALVKLFRQSEVVHVRNVDGFGLDTEVVFRKKRDS 233
>AT4G24805.1 | chr4:12785315-12786058 FORWARD LENGTH=248
Length = 247
Score = 176 bits (447), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 82/116 (70%), Positives = 96/116 (82%)
Query: 1 VGVRDAVGIDLAPAPPLVVRGDFHAQPFANDTFDFEFSNVFDHALYPGRFVAEIERTLRP 60
+GV D+VGIDL P PPLVV+GDFHAQPF +TFDFEFSNVFDHALYP +FV EIERTL+P
Sbjct: 129 IGVEDSVGIDLVPRPPLVVKGDFHAQPFDEETFDFEFSNVFDHALYPEKFVGEIERTLKP 188
Query: 61 GGVAVLHVAVHRRGDKYSANDLLDVHGLVGLFRRSDVVRISKVDAFGLDTEVILRK 116
GGV VLHV++ + DKYSANDLL V LV LF+RS VV + K+D FGLDTE++ RK
Sbjct: 189 GGVCVLHVSISGKTDKYSANDLLSVKPLVKLFKRSKVVEMRKIDGFGLDTEIVFRK 244
>AT5G01710.1 | chr5:263709-265250 REVERSE LENGTH=514
Length = 513
Score = 74.3 bits (181), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 11/108 (10%)
Query: 1 VGVRDAVGIDLAPAPPLVVRGDFHAQPFANDTFDFEFS--NVFDHALYPGRFVAEIERTL 58
+GV+++VGI + PLVVRG+ HA PF ++ FDF FS + +L F EI RTL
Sbjct: 130 IGVKNSVGISKKASRPLVVRGEGHAIPFEDNAFDFVFSGGDRLGKSLKQLEFADEITRTL 189
Query: 59 RPGGVAVLHVAVHRRGDKYSANDLLDVHGLVGLFRRSDVVRISKVDAF 106
+P G AV+HV D YS N LD LF +V++ +D F
Sbjct: 190 KPEGFAVVHVGA---TDTYSFNSFLD------LFNSCRLVKMRDIDGF 228
>AT2G16030.1 | chr2:6974196-6974891 REVERSE LENGTH=232
Length = 231
Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 1 VGVRDAVGIDLAPAPPLVVRGDFHAQPFANDTFDFEFSNVFDHALYPGRFVAEIERTLRP 60
+G+ D ++L + PLV R D H PF + FDF F+ AL+P +FV E+ERT+R
Sbjct: 119 IGLSDVTAVELVDSIPLVKRADPHNLPFFDGVFDFAFTAHLAEALFPWQFVEEMERTVRR 178
Query: 61 GGVAVLHVAVHRRGDKYSANDLLDVHGLVGLFRRSDVVRISKVDAFGLDTEVILRKKRSS 120
GG V+ V D+ +D+ D+ LF S VV ++ V G IL K + S
Sbjct: 179 GGFCVVSV------DECGGDDVRDI---ARLFHNSKVVDVANVTLEGSKKTSILFKVQDS 229
Query: 121 P 121
P
Sbjct: 230 P 230
>AT4G26730.1 | chr4:13472579-13473309 FORWARD LENGTH=209
Length = 208
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 9/120 (7%)
Query: 1 VGVRDAVGIDLAPAPPLVVRGDFHAQPFANDTFDFEFSNVFDHALYPGRFVAEIERTLRP 60
+G+ D ++L + PLV R D H PF + FDF F+ AL+P RFV E+ERT+R
Sbjct: 84 IGLSDVTAVELVDSIPLVKRADPHNLPFFDRVFDFVFTAHLAEALFPWRFVEEMERTVRR 143
Query: 61 GGVAVLHVAVHRRGDKYSANDLLDVHGLVGLFRRSDVVRISKVDAFGLDTEVILRKKRSS 120
GG V+ V D+ S +D+ D+ F S +V ++ V + IL K + S
Sbjct: 144 GGFCVVAV------DECSGDDVRDI---ARFFHNSKIVDVANVTLERVKRTSILFKLQDS 194
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.144 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,669,678
Number of extensions: 102518
Number of successful extensions: 258
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 5
Length of query: 121
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 35
Effective length of database: 8,748,793
Effective search space: 306207755
Effective search space used: 306207755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)