BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0102800 Os08g0102800|AK120363
         (156 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23760.1  | chr3:8562965-8564640 REVERSE LENGTH=195             70   4e-13
AT4G14100.1  | chr4:8120749-8122288 FORWARD LENGTH=207             69   1e-12

>AT3G23760.1 | chr3:8562965-8564640 REVERSE LENGTH=195
          Length = 194

 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 10/83 (12%)

Query: 40  WPERFHAVVVSINLTNHDRGGGRLQLIEIYYDWPHGRDLNIVRDQLSGDPPLYNVEWVNG 99
           WPE+FHA+++           G L++++++YDW +GR+ NI++ QL      Y++EW NG
Sbjct: 38  WPEQFHALMLM-------NKSGSLEIVDLWYDWVNGRNFNIIQKQLG--KLTYDLEWNNG 88

Query: 100 TSYLFDTAAS-SCRTFQFPVGIL 121
           TS+ +   AS +CRT  F VGIL
Sbjct: 89  TSFYYTLDASKTCRTVHFEVGIL 111



>AT4G14100.1 | chr4:8120749-8122288 FORWARD LENGTH=207
          Length = 206

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 10/83 (12%)

Query: 40  WPERFHAVVVSINLTNHDRGGGRLQLIEIYYDWPHGRDLNIVRDQLSGDPPLYNVEWVNG 99
           WP +FHA++      N+    G L +I+++YDW +GR+ NI+++QL G    Y++EW NG
Sbjct: 33  WPHQFHALM----FMNY---SGDLSMIDLWYDWTNGRNFNIIQEQLGG--ITYDLEWNNG 83

Query: 100 TSYLFDTAAS-SCRTFQFPVGIL 121
           TS+ +    S SCR+ Q  VGIL
Sbjct: 84  TSFFYTLDESKSCRSGQLEVGIL 106



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,657,025
Number of extensions: 148754
Number of successful extensions: 301
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 2
Length of query: 156
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 66
Effective length of database: 8,639,129
Effective search space: 570182514
Effective search space used: 570182514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)