BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0102000 Os08g0102000|AK068156
         (200 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26220.1  | chr1:9071157-9071750 FORWARD LENGTH=198            170   5e-43
AT1G32070.2  | chr1:11534851-11536289 REVERSE LENGTH=259           90   9e-19

>AT1G26220.1 | chr1:9071157-9071750 FORWARD LENGTH=198
          Length = 197

 Score =  170 bits (430), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 81/149 (54%), Positives = 106/149 (71%), Gaps = 4/149 (2%)

Query: 47  DSELAARGFAVRRSSTGLDVGALNEVFARVGFPXXXXXXXXXXXXHSE-VVWLEDSASSS 105
           D +L +RGF +RR++ GL++  LN VFA VGFP            H++ ++W+E   +  
Sbjct: 50  DEDLESRGFLLRRTTEGLNLDQLNSVFAAVGFPRRDTAKIEVALQHTDALLWVEYEKTR- 108

Query: 106 AGRPVAFARAAGDGVFNAVVWDVVVEPSCQGLGLGRAVMERLVADLRGKGVSNIALYAEP 165
             RPVAFARA GDGVFNA++WDVVV+PS Q  GLG+AVMERL+ DL+ KG+ NIALY+EP
Sbjct: 109 --RPVAFARATGDGVFNAIIWDVVVDPSFQSCGLGKAVMERLIEDLQVKGICNIALYSEP 166

Query: 166 RVVGFYRLLGFAMDPDAIRGMAFYRSRQQ 194
           RV+GFYR LGF  DPD I+GM F R ++ 
Sbjct: 167 RVLGFYRPLGFVSDPDGIKGMVFIRKQRN 195



>AT1G32070.2 | chr1:11534851-11536289 REVERSE LENGTH=259
          Length = 258

 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 57/80 (71%)

Query: 110 VAFARAAGDGVFNAVVWDVVVEPSCQGLGLGRAVMERLVADLRGKGVSNIALYAEPRVVG 169
           +  ARA  D  FNA +WDV+V+P  QG GLG+A++E+LV  L  + + NI+L+A+ +VV 
Sbjct: 177 IGMARATSDHAFNATIWDVLVDPEYQGQGLGKALVEKLVRALLQRDIGNISLFADSQVVD 236

Query: 170 FYRLLGFAMDPDAIRGMAFY 189
           FY+ LGF  DP+ I+GM +Y
Sbjct: 237 FYQNLGFEADPEGIKGMFWY 256



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,843,783
Number of extensions: 92444
Number of successful extensions: 170
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 2
Length of query: 200
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 106
Effective length of database: 8,529,465
Effective search space: 904123290
Effective search space used: 904123290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)